RNA id: XM_007260887.3


Basic Information

Item Value
RNA id XM_007260887.3
length 5304
RNA type mRNA
GC content 0.45
exon number 32
gene id myo1c
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 13591095 ~ 13658924 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGCTGGTGGTGGAGGAGCTGAGAGGCGGGTGAGGAGCGTGTTTCTCACTTTTTATCCCCACACGCTTCAGAGCATGGCTCAGTATTCAGTCCTGCCCATTCATTGAAGAGCGGCTTCTGACTTCACTGAACCCCGCGGGGAGTGACCTGCACACTCGGCTTGACAGGGAGGACTCTGAGATACAGGAGAAAAACTACAACAGCAGAATCTGCTGCTGAGAGACTGTGAGCTGCTGAAGCCGCGAGAGCTTCACtaaccttattattattaactgtaaCGTTATTTGTGGAGTTTGAGAGTAAACAGCGCGTGGAGTGACGTAGCTGAAGCCCAGAGACGGTTGGCCGCcctgaggagtgagagagagagactggagaGAGTGAATTCGGATTAAACAACACACTTTTTCGTGTAACATCTGTTGAATGAATGCGGTCTTATAGAGAAAGACACCCGCCAAGGATTGAGAGCACAGTTGTGGAGAAAGGAAGGAGGAGTTGAGTGACTGACTTCAGCTTTGTGGCTTTAAGGCGGTGGGCAGTGACGGTGTGAGGGTCATGATGGAGAGTGCCCTGACAGCCAGGGATCGGGTGGGGGTGCAGGACTTTGTCCTGCTGGAGAATCACACCAGCGAGGTGGCCTTCATTGAGAACCTGCGCAAACGCTTCAAAGAGAACCTCATCTATacaTATATTGGTTCAGTGCTGGTGTCTGTGAATCCATATAAGGACCTAGAGATCTACACCAAGCAGCATATGGAGCGATACAGGGGTGTTAACTTTTACGAAGTGTCCCCTCACATTTATGCTGTGTCTGATAATGCGTATCGCTCCATGCGGACGGAGAGGCGGGACCAGTGCATCCTAATCTCAGGGGAGAGTGGTGCTGGGAAGACGGAGGCATCTAAGAAGGTCCTGCAGTACTACGCCGTCACCTGTCCTGCCAGTGATCAAGTGCAGACTGTGAAAGACCGCCTACTGCAGTCCAACCCTGTCCTGGAGGCCTTTGGAAATGCCAAAACACTGCGTAATGACAACTCCAGCCGATTTGGTAAATACATGGACATTCAGTTTGACTTCAAGGGTGCTCCAGTGGGAGGACACATTCTGAACTACCTGCTAGAGAAATCTCGAGTGGTACACCAGAGCCATGGGGAGAGAAACTTCCACATCTTCTATCAGCTGAtagagggaggagaagaagacCTGCTGAGAAGACTGGGCCTAGAAAGGAATACACAGCAGTACCAGTACCTCATCaagGGAAATTGTCCTAAAGTGAGCTCCATTAATGACCGCAGTGACTGGAAGGCAGTGAGGAAAGCCCTGACTGTGATTGGATTCAATGAGGATGAAGTGGAGGAGCTGCTGAACATTATTGCCAGTGTGCTTCACTTGGGGAATGTGCAGTTCGGAGGGGAGGACAGTGGCAATGCCTACATTACAACCGACACCCAGATTAAATACTTAGCCAGGTTGATAGGTGTGGATAGCTCAGTTCTGAAAGAGGCTCTGACACATAAGAAGATTACTGCAAAAGGAGAAGAGCTCATGAGCCCACTCAACCAGGAGCAGGCTTCCTCAGCACGAGATGCTTTATCTAAAGCCATATACGGCCGCACCTTTACCTGGCTAGTCAACAAAATCAACGACTCTCTTGCCTACCAGGATGACGCCTACAGCAGTAAGAATACCTCTGTCATTGGCCTGTTGGATATCTATGGTTTTGAAGTCTTTCAGAACAACAGTTTTGAACAGTTCTGCATTAACTACTGCAACGAGAAGCTGCAGCAACTCTTCATCGAGCTGACCCTGAAATCAGAACAAGAGGAGTACGAAGCCGAGGGAATCACGTGGGAGCCTGTGCAATATTTCAATAACAAGATTATTTGTGATCTTGTGGAGGAGAAGTTCAAAGGCATCATCTCGATCTTGgATGAGGAATGCCTCAGGCCGGGAGATGCCAGTGACATCACTTTTCTGCAGAAGCTGGAAGACACCGTGGGAGGCCATGCTCACTTCTTAACTCATAAGCTGGCTGATGGAAAGACCCGGAAAGTGATGGGCCGAGACGAGTTCAGGCTGCTGCATTATGCAGGAGAAGTCAACTACAATGTGAATGGCTTTCTGGACAAGAACAATGACCTCCTCTTCAGAAATTTGAAGGAGGTTATGTGCATGTCAGAAAACAAGATTCTCACACAGTGTTTTGACCGGGAAGAGCTAACAGACAAGAAACGACCAGAAACGACGGCTACCCAGTTTAAGACTAGCTTGACCAAGTTGATGGAAATCCTGATGTCCAAGGAACCGTCATACGTGCGCTGCATGAAACCCAACGATGCCAAGCAGGCTGGGCGTTTTGATGAAGTTCTGATCAGGCACCAGGTGAAGTATCTGGGGCTGATGGAGAATCTCCGAGTGAGGAGAGCTGGCTTTGCCTACCGCCGCCGCTACGAGATCTTCCTCCAGAGGTATAAGTCTCTATGTCCAGACACCTGGCCCAACTGGGATGGCCGTTTGGTTGATGGAGTTTCCACACTTGTCAAGCATCTTGGCTACAAGCCTGAGGAGTACAAACTTGGCAGGTCCAAAATCTTCATCCGTTTCCCAAAGACCTTGTTTGCAACAGAAGATGCCTTAGAAGTCAGAAAACACAGTCTCGcAACCCAACTTCAGTCATCCTGGAAAGGCTACAGTCAGAAATCCAAATACCGCAAACTCAGGCACTCAGCCATCCTGATCCAGGCCTGGTGGAGAGGTATTCTGGCCCGCAGGAGAGCACAACGCAGGAGACAAGCAGCTGACACCATTCGCAGGTTCATCAAAGGATTCATGTACCGTCACCAGCCCCGCTGTCCTGAGAATGAGTACTTCCTTGACTATGTCCGCTACTCCTTCCTGATGAAGCTGCACAGGAACTTACCTAAAACTGTTCTGGACAAGAGCTGGCCCACACCGCcacctgccctcactgagGCATCAGAGCACCTCCGCAAGCTCTGCATGCAGAACATGGTGTGGAAGTACTGCAAGAACATCAGCCCAGAGTGGAAGCATCAGATGGAGCAAAAGTGTGTGGCCAGTGAAATCTTCAAGGACAAAAAAGACAACTACCCTCAGAGTGTCCCCAAGCTGTTTGTGGGAACAAGGCTGAATGGAGAGGACATCAATCCCAAAGTGCTTCAGACTCTGGGCAGTGAGAAGATGAAGTATGCTGTCCCAGTCATTAAATATGACCGAAAAGGATACAAAGCTCGTGCTCGGCAGCTTCTGCTTACCAGCAATAGTGTAGTGATAGTGGAGGATGCCAAGCTGAAGCAGCGAATTGATTACAGTGCTCTGAAAGGGATCTCTGTCAGCTCGCTCAGTGATGGGATGTTTGTCCTCCACGTTCTCTGTGAAGACAATAAGCAGAAGGGTGATGTAGTGCTTCAGAGCGATCATGTGATCGAGACCTTAACTAAAGCTGCAATCTGTGCCGAGAAGATCAACAACATCAACATCAACCAGGGAAGCATAACGTTCACAGTGGGACAAGGAAAAGAAGGGATTATTGACTTCATATCTGGCTCTGAGCTGCTGATTGCCAAGGCTAAGAATGGGCACCTTTCTGTGACTGCCCCTCGCCTCAACTCAAGATGATCGACTCTTTATGACCAATCACTTCCAGCATCCTTAACGGATGTCCTTCCAGATACACTCTCCATCACACCAATCAAGCAACTGCAGGCGGAGCCTTGCTCTGTCAGTAAAAGACGCCAGCCAGCTGCACCAAAGGCTTAGCTTTCAGTAGGGAAAGTCCTGCTAACtaattgatatttatgtttatatgtttcgGGGAGTTTAATACTGTTATATGAATATgatgattttatattttgaagCCAAGGAATAACAATAATATGCAGGTGCACAGTTCTGTACTCTGTCTTTATCTTGCTTATTTTGGGGAACAGTAGTTAAGATATTTGCGAAGTCTCAGCCTTGTTGACAAGGAAATCAGGGTTAGCAGTAAGTAGATTTAGACCGTTTAGATTTCATTTACCTTTCCCTAGTACACTTTATtccttataaacacacacagaaactgtATTCTTTACTTATATAGTGAGAGGATATTTGAAAGTTATTAGTGGCTTGCTTAGAGAGGGAGACACAGGTTAAAGTCTATACCTACGGGTGAACCTGGCTGTACCAAATCGTTCAGCAAATACCAGCCTGTTCATTCTTACTAGTATAGTGAGGAAAATGGAGAAGAAAGTGGAGGTGTTTTGTTGGGAGTGTATGCCAAGCATATTTGCGGAAATTAAAAGAGTGGTGGGTCCCTGTCCCATTGTAAGagaaacactatttaaaaaataaaggggtTCTTAAATCGATGCCAttgaataacttaaaaaaaatggttatttaCCAGTCTACCTTTTTATGCTCCATGATAGTTATTACATCTTAAGGATTACTAAACAGTAACTACAAACAAAGTAACGTAAATTGGCCGATTTTTTTCTTAAGTGATAactgtggtttaaaaaaaaaaaacaagaaccacCAGTGGATCTGTGGAGTGGAATGGAACAGCATCGTGCAAAGAACCAATTAAGTCAGTAAGTTAGGAGCCCATGCCATGATGGTAAATTAATATTAGACTCATATGTGGACATGTAGTATTTAAGAAGAAAATGTTAGAGAATAAATAACCCAAAATTTCAGTAGGCTGGTTTTcaccatttttacattttcactccACATTAGTGCCTTCATCCTGTTTATCCAAATAAAAGTTTTGATTGTCAGACATTTATTTAATAGGTAAAAATAATAGTAGGCAACAGGATCTGCCTATTGAAAGAGCATCCTTTATGTACAGTAATAAATACCTAGGTCTCAGTTCAAATGCACTGCATACATATACCACCTCTATTAATGTCACAGCTTTCTAGGggtaaaaaaatgacaaaacattcTTTGTATGACTTATGTTTTTCTCTGAGACAGGTTTGTGTTCTGTATGTAGATATTGATATTGTAAGTGCTACTTTACAATAACTGTGCATCAACCAAATAAAGAAGCCACTTCAGGAACAAAAGTGCAGACTGGCACACAATGGAAATGCTTTTCTTAGGAAATCAGGCTTACTTGTACTGTGTTTACAGTATAATTGTTGCTCTTGAGTTTCCTATAAAATACAGATTGTAGAAGGGCCTGTTATAGAAAGTTAAGCAAGTGCCTAAAAGGGTAACTCTCATATGCAGAGGATAGGCTTTAAATATGACACTAGtagaactgtaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K10356 MYO1; myosin I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4534 lncRNA downstream 18723 13544500 ~ 13572372 (-) False slc43a2
XR_002652513.1 lncRNA downstream 206148 13381254 ~ 13384947 (-) True LOC111197623
TU4402 lncRNA downstream 440091 13147138 ~ 13151004 (-) False G3356
TU4403 lncRNA downstream 440091 13147138 ~ 13151004 (-) True G3356
XR_002652423.1 lncRNA downstream 459593 13130479 ~ 13131502 (-) False LOC111197384
TU4557 lncRNA upstream 23973 13674108 ~ 13674572 (-) True G3459
TU4572 lncRNA upstream 30384 13680519 ~ 13721025 (-) True G3469
TU4577 lncRNA upstream 39626 13689761 ~ 13691882 (-) True G3474
TU4757 lncRNA upstream 474038 14124173 ~ 14133237 (-) False LOC111189390
TU4755 lncRNA upstream 478203 14128338 ~ 14133237 (-) False LOC111189390
XM_007260889.3 mRNA downstream 9628 13574774 ~ 13581467 (-) True LOC103046123
XM_007260892.3 mRNA downstream 19555 13547399 ~ 13571540 (-) True slc43a2
XM_022662271.1 mRNA downstream 19556 13547399 ~ 13571539 (-) False slc43a2
XM_007260893.2 mRNA downstream 49831 13526419 ~ 13541264 (-) True LOC103047347
XM_022687165.1 mRNA downstream 78645 13484174 ~ 13512450 (-) False LOC103047661
XM_007260880.3 mRNA upstream 53848 13703983 ~ 13713375 (-) True LOC103043894
XM_022662993.1 mRNA upstream 84338 13734473 ~ 13750279 (-) False LOC103025751
XM_022663041.1 mRNA upstream 84338 13734473 ~ 13750279 (-) False LOC103025751
XM_022662931.1 mRNA upstream 84338 13734473 ~ 13750279 (-) True LOC103025751
XM_022662980.1 mRNA upstream 84338 13734473 ~ 13750278 (-) False LOC103025751
TU4408 other downstream 455454 13130212 ~ 13135641 (-) True LOC111197384
TU4317 other downstream 832582 12740144 ~ 12758513 (-) True G3297
XR_002651739.1 other downstream 2297213 11281209 ~ 11293882 (-) False sarm1
TU3680 other downstream 2906630 10662422 ~ 10684465 (-) False LOC103025442
TU3640 other downstream 3008348 10582289 ~ 10582747 (-) True G2783
XR_002648804.1 other upstream 474647 14124782 ~ 14132536 (-) False LOC111189390
XR_002648814.1 other upstream 474993 14125128 ~ 14132536 (-) False LOC111189390
XR_002648788.1 other upstream 477234 14127369 ~ 14132536 (-) False LOC111189390
XR_002648822.1 other upstream 477302 14127437 ~ 14132536 (-) False LOC111189390
TU4805 other upstream 633488 14283623 ~ 14284225 (-) True G3612

Expression Profile