RNA id: XM_007260889.3


Basic Information

Item Value
RNA id XM_007260889.3
length 4266
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC103046123
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 13574774 ~ 13581467 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgattatattccagaggtgttcaatttggtaaaatcaaagaaactcataattttttaagtggtctcaaaTTTTTTTCCTTGAGCTAAATATAGGCGATATAGgggtataaagtactagagacagacttgagtaaaagcacatgtgctctatcaaaaaactGAATTGAGTAGAAGTGCTTCTTTAGGCACCAAACTTAAGTGAAAGtactaatatatttaaagtttctaagccttttctaaaatatgctgttctgaaagttctgaaagtaaaagtacagtactgtgttctGTAGTAATTACAAAAAGCAgtgaaaaaaagagcaaaaggcAGAACGGGAGCAGAGTGGTTGTCTTATGAGGTCATCATGATCTCTTAATTCACTCAATGGTGAGCAGCTTCATCAAGCCTGttgacagtgcagagcatctatCGCTCTGGCAGTAATAATGTGAGTTTGGAATAATTTAACAAGTAACGATGTCACaaatcaaaaaaaaatcaccggagtaaaattataaaacttacaaaaaatatgtagtggagtaaaagtggaagtatgagaaaaaaaaagaatactgtAATAGATACAGATGTAGCATTGTACTATACCTGAGTACAGTAGGGAAGTAGCTCTACTTctttactatacatctctggtTATTGAGTTTTGTACCTAGTAGAAACAACTCGTCAGTAGTTTCAGGCTAGGTTACACAAAAGATAGTAGCCTCCAGCGACTGGACCTGTCACCTGTTTACAGTAAATTTCCCTGATGGCTTTGGGACCATGCAGTCTAGATCTACAAAAACGGCGTGTGGAGCTTGTGAGGGACTGGAGCAAACACATAAGCTCCCTTCTGGACCTCCTCTTCAATATGGGAACAGTGACCGAGGAGGACCTCAGCCTTATAAGAGGTGGGGGACATACAGGGGAGCTGGACTGCATGAGGACGCTTCTGGATGTTCTACAAGGCAGAGGAGAGGAGGCATGCCGTGCCTTCCAGTTTGTGTTGTCCAACTTCAAGACTTCGACTGCCAGTGAAACTGGAAAAGCCAAGCTCTTCCCGCAGAACACACATAACATGCAGAAAGTACTTAAGGAAGGTCTCCAGAAACACAAGGACATCCTAGCTAAGCACCATGGTCCAGTATTATCCAGCTACCTCAGCTCTGCTAGACAAACCTCCAGATCTGCTGAGGTGGACACTTTCACAGACATCACTTTCTGTAGGCAGGTGGGATACCCAGTGCCACTGCAGTACCAACACGAGGCAACTGTGGTCGGGGATTCTTTCAGAGCAAGCAGAGATGAAGCTAAAAGAAGGGGTCAGACCTGTGCTTTTAGAGAATTGTACCAGAGTCTGCTTTGTGTCTCAGAGGATGGCGTGGCACTGCTTTCAGGGGTCGCTGGAAGCGGCAAAACTACAGTGATTAAGCGTCTAGTTCAACAGTGGGCTGCAGATGTAGATGCACAAAAAATCGTCCTGTCCATGTCTTTCCGTGAACTAAGCTTGATTACTGAGCCCCAGAGCCTGCAAGGACTTCTGTCGGATCATTATAGCCATTTAAAACCTGTCCTACCAGAGTTATTGACTTCAACCCAGGGCCAGGTTGTGCTTATCCTGGATGGGCTTGATGAGTTCTGTTTCCCTTTGGACTTTGAACGCACCCCTAAATGCTCAGACCCTGAGCGGGAACTGTCTGTGGGTGCTCTGGTAGTGAACCTGATAAAGGGCAACCTCTTGCCTGGCACTTCAATTCTCCTCACTTCCCGTCCCCATGCTGTTGCCAAAGTACCCCAGCTGCTGGTCAGGCAGTTCTACAGTGTGTTAGGGTTTTCCCCAGCTCAACAGAAGCAGTACTTTGAGCAGAACTGCAGCTCCAGCCAAGCTGCAGCTACAGTGTGGAGTTTTGTGTCCTCCCACAAACCAATTCAGCTTATGTGCCACATCCCTGCCTTCTGCTGGATTGTCTCCACGGCTTTGCACGAAGGCACTTCTTGCCTCTTTTTTGACACTGTACAGACGGGTGCTGCATCACAAGAAAATGGAAGTGACAGCACTAAGGAAGTAAGTGGTGCTGAATGCTCTGATCAGTCCTCATCTGATCCTAATGCATTGTTGGCAAATGGTCCGGCTGCTCAGAGTGTCTGCAGGCCAACCACTGTCACTGAGATCTACTGCTGCTTCCTTAAATCCATCGTGGTCTTCCATGTGGGTGGATGCATGGAGGGCATGCACCTCAACAGGCTTCAGGATGCCCCTCGTGTCTTAAGGGAGAACAAAGGCATGCTCAGGTGTCTCGGCGCCTTGGCCTTCAGAGGCCTGCTGGAGAGGCGATTTGTCTTTGACCTCTCGGACCTAAGCTCGTTCTCACTGGACAGCTGTGAGCTAACACAAGCGTTCACAGTGGAAGTCCTTAAAGAGGACAAAGCTTCTCTCACTTACGAGAAGAGCTTCCATTTCATTCACACCAGTGTGCAGGAGTTCCTAGCTGCACTTTATTATATGCTGGAATCATTCTCAGGGTCGGATCCATTCTCAGGACTTAAGCCAGCAGTGCCAGCATTGCACAAGCATCTGATGTCTTTTGTTAACAAGCTGCGACGGCCAAAACGAGTCTTACACAAAAGAGTCAAGAAAGCTTTCCGTTGTGGAGAGAGTCATCAGTCTGGACACATGGACCTCTTCTGCAGGTTCGTGTCTGGCCTTTTCGTCCCTAAGACCCGCTTCATCTTGGATGGTCTTTTCTCTGGCGAGCACAGGCCTCGACTGGCCTCGTGCATGAATTTGCCCTCTGTGTCCCCTCCATTCGTTGTGAAGTTGCTACGTTCACAGCTTCacagctccagcctcagccCAGAGAGGCAGCTGAACATATGCCACTGCCTTTACGAGGCTCAAGACTCCGAGCTGTCCCTGCATCTCCAGCACTGGCTGACTGTTCTTTCCCAGCAGACATCAGGACAGTGTGCTTTACTGAACAGAGACTGGAGTGAGCTGGCTTTTCTGCTGCAGCTCTGCCCAGATCTGCAGCAGCTGAAACTGGATGCTCAGGAGCTGGATGCTGTAGGACTACGCAGACTGCTGCCTGTTCTTCCCCTCTTCTCCACTCTCAGTCTTGCACAGAATCCTCTTGGTCCAGAGGGAGCAGAGGTGCTATCTTTGGCACTGCGCAGTCCAGATTGTCAAATTGAGCATCTGTGGGTGGTATCAACAGACCTGGGCTGTGAGGGATTCAGAAACTTGGCAGAGGGACTTAAAGACAATCGAACAGTGTTTGATCTCCGGATGGCAATAAATCATATTGGTGACACTGGAGCTGCCTGCCTTGCTGAACTATTGAAGACTAATCGCACTCTGAGAGATATCAGactcaGAGATAATTTAGTGACTGACAGCGGGGCAGAACTTCTGATGGAAGCCCTAACGGAGAACACCACCTTAGAATACCTCTGgctgtttgacaACAAGCTTTCCAAGGAGTGTGTTCAGAAGCTGAAAGAATTTTCAAAGAGCAGATCCACACTTGACATTAAAGTCTGTTTCTGAATCGCACCCAggaacatatttcatatgtggGACtagtattagtaatattacTGAGACATGCTTTTCTTGTATTATGTGTGGGTCATAAATTGGTGAGAGGGCATATGTGCAACTAATAATGGATTTTATGTTACGTTTTTCTTCCTTTTACAAAGAGGCACATTAcggtttaaacaaaaaaaatatttttatgtaaattaaagattttattcttttatgAATTGAATATGTAGCCATAAGACCAAGTTATTATGAAATCACCATTGTTTTAAATGGAAGAATATGCAGGGGTCTCAATAGGGCTAGATAACCAAACTGTTCACGTACATTCTTGGTATTCTGAGGCTTTGAACAATGTCTGCATCAATTCATCTGCATCACATGCAGGGGAGAGAAGGGAAAAGtaaatactgattttttaaTGTGCTGTCATGTGATTTTAAGATTTACTATGGGGAAATAACTGACCTTTCTTATATGTTGCTTTTCACCCCACCATTCCTTTCAGCCAACCAAATCAAAACTTTTGGCTACTGTGGACAAGGCTACATTTCTACTGGGAATTCTCAGTATTCATTTTTTAGATTGTAATACCTTATACATTATCTTCTGTGGTCTAACTGTTAcagtgaaactgtgatttaaatctatttattttcagattatacttttgtaatgtttatatacaataaagtgttgtatgttttcagttttt

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4534 lncRNA downstream 2402 13544500 ~ 13572372 (-) False slc43a2
XR_002652513.1 lncRNA downstream 189827 13381254 ~ 13384947 (-) True LOC111197623
TU4402 lncRNA downstream 423770 13147138 ~ 13151004 (-) False G3356
TU4403 lncRNA downstream 423770 13147138 ~ 13151004 (-) True G3356
XR_002652423.1 lncRNA downstream 443272 13130479 ~ 13131502 (-) False LOC111197384
TU4557 lncRNA upstream 92641 13674108 ~ 13674572 (-) True G3459
TU4572 lncRNA upstream 99052 13680519 ~ 13721025 (-) True G3469
TU4577 lncRNA upstream 108294 13689761 ~ 13691882 (-) True G3474
TU4757 lncRNA upstream 542706 14124173 ~ 14133237 (-) False LOC111189390
TU4755 lncRNA upstream 546871 14128338 ~ 14133237 (-) False LOC111189390
XM_007260892.3 mRNA downstream 3234 13547399 ~ 13571540 (-) True slc43a2
XM_022662271.1 mRNA downstream 3235 13547399 ~ 13571539 (-) False slc43a2
XM_007260893.2 mRNA downstream 33510 13526419 ~ 13541264 (-) True LOC103047347
XM_007260894.3 mRNA downstream 61413 13484174 ~ 13513361 (-) True LOC103047661
XM_022687165.1 mRNA downstream 62324 13484174 ~ 13512450 (-) False LOC103047661
XM_007260885.3 mRNA upstream 9628 13591095 ~ 13658924 (-) False myo1c
XM_007260887.3 mRNA upstream 9628 13591095 ~ 13650135 (-) True myo1c
XM_007260886.3 mRNA upstream 9628 13591095 ~ 13631013 (-) False myo1c
XM_007260884.3 mRNA upstream 9628 13591095 ~ 13617700 (-) False myo1c
XM_007260880.3 mRNA upstream 122516 13703983 ~ 13713375 (-) True LOC103043894
TU4408 other downstream 439133 13130212 ~ 13135641 (-) True LOC111197384
TU4317 other downstream 816261 12740144 ~ 12758513 (-) True G3297
XR_002651739.1 other downstream 2280892 11281209 ~ 11293882 (-) False sarm1
TU3680 other downstream 2890309 10662422 ~ 10684465 (-) False LOC103025442
TU3640 other downstream 2992027 10582289 ~ 10582747 (-) True G2783
XR_002648804.1 other upstream 543315 14124782 ~ 14132536 (-) False LOC111189390
XR_002648814.1 other upstream 543661 14125128 ~ 14132536 (-) False LOC111189390
XR_002648788.1 other upstream 545902 14127369 ~ 14132536 (-) False LOC111189390
XR_002648822.1 other upstream 545970 14127437 ~ 14132536 (-) False LOC111189390
TU4805 other upstream 702156 14283623 ~ 14284225 (-) True G3612

Expression Profile