RNA id: XM_015601043.2


Basic Information

Item Value
RNA id XM_015601043.2
length 1305
RNA type mRNA
GC content 0.42
exon number 10
gene id lrrc72
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11304590 ~ 11308672 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCCCCAGGTGTCATGTCACTGGTGTTGCCACATGGCAAAAACActtactttaaatttaaaaccacATTGATAGCATTAGTTGACTTGATTTTTCTGAAGAAACATGAAGTAAAGCATGTTGTAAGTCCACagtctctttttatttatctgaaaCTTTCTCAATGTTAGTTTTTATCCATCttgtaaaatgcattaaaaaatgacACTGGGCACCCGCAATTATTCAAAAAATGCACATAAGAGGTACAAAATAATTCAgcctttttaaaagtttaattgaTATAAAAAGAGTGTGTTTCTGCAGAAtcattaaaatgacattttaccCATTTAATCTTTGCATTTGTGTGGTTAAGTTTAGCAGCCACTCTGCCTCACAAGGCCTTTAACAGGCCCCTCTCTCTTAGAtctgctctcaaacacacacacagcgtttCTTGGCAACAGGCTGGTTGTGTGAGACATGGAGgagagtGGAAGCCCTATGTGCAGGCCTACAAAAGACCTCCATATCAGTGAGCTTTATCTGGCAAAAAGGGGTCTCTCAGCTATTCCTGATTTGTCCAAATTCAAACAGCTCAGATATGTATGGCTTAACAACAACAAAataaaGAATTTAAATGGCAGTGTGTTTAACTGCTGTATAGCAGAGCTTTACCTACAGAATAATGAAATCACCACAATCTCAGGGGCCTTGAGGCACCTGACCTGTCTGCGAGTGCTGCTGCTTCACAATAACCAGCTGAAGAATCTGGAGGAGACAGTTGCTGAGCTGAGGCACACACACTGCCTGCAAACTGTCAATTTCTTCCTCAACCCCTTCACACAAGACCCTGAATACCGGGAATATGTGATCCATCACCTGCCATCTGTTCAAATACTGGACAGGAAAGAAGTGAGGCAGGAGGAGAGGAGACATGCTTTCAGACTCTTCTGTTCTGAGAGACTGAGAGTTCTGGACACACTTGCTTTTGGTAGACGTGCAGTTACGCCCCCTGTTGGACGGAAAATAACTCAGGATATGGTAAAATTGAGAGGAtaccttcagaggtcttgtggatTCCATGCCTCAACAGGTCAGAGCTGTTTAGgtcAGCATAGAACAATGTTTCCCTTAAATTGTCCGTCTGAGTACAAATCTGTCCTGCAATTCTCGATCATGGACTGGTGCAGTATGAGAACAACTCAGCAGAGCCCCCTGGAGGAGGAGGGTCCAACTGCACTCAACATCCTTACTGTCAAATTCAGATAACCCATGCACATAAGTGCTGccacaaacattaaaacacttcaGTGATACTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3780 lncRNA downstream 142517 11161827 ~ 11162073 (-) True G2897
TU3766 lncRNA downstream 186627 11116380 ~ 11117963 (-) True G2888
TU3759 lncRNA downstream 191784 11092170 ~ 11112806 (-) True G2881
TU3735 lncRNA downstream 233351 11071033 ~ 11071239 (-) True G2865
TU3724 lncRNA downstream 306510 10997852 ~ 10998080 (-) True G2857
TU3933 lncRNA upstream 115971 11424634 ~ 11425258 (-) True G3010
TU3940 lncRNA upstream 153997 11462660 ~ 11466549 (-) True G3013
TU3991 lncRNA upstream 422852 11731515 ~ 11754015 (-) True G3055
TU3999 lncRNA upstream 446632 11755295 ~ 11760809 (-) True G3062
TU4000 lncRNA upstream 450545 11759208 ~ 11759827 (-) False G3062
XM_022683451.1 mRNA downstream 10708 11281209 ~ 11293882 (-) False sarm1
XM_007232334.3 mRNA downstream 10708 11281209 ~ 11293882 (-) True sarm1
XM_022683325.1 mRNA downstream 169288 11120807 ~ 11135302 (-) True foxn1
XM_022683219.1 mRNA downstream 220707 11080848 ~ 11083883 (-) True LOC103042223
XM_007232339.2 mRNA upstream 400962 11709625 ~ 11713271 (-) True arl4a
XM_007232340.3 mRNA upstream 405458 11714121 ~ 11726198 (-) True LOC103024995
XM_007232357.3 mRNA upstream 458892 11767555 ~ 11777303 (-) True LOC103030898
XM_007232341.3 mRNA upstream 468915 11777578 ~ 11787142 (-) True tmem106b
XM_022671366.1 mRNA upstream 615339 11924002 ~ 11940744 (-) True LOC111192956
XR_002651739.1 other downstream 10708 11281209 ~ 11293882 (-) False sarm1
TU3680 other downstream 620125 10662422 ~ 10684465 (-) False LOC103025442
TU3640 other downstream 721843 10582289 ~ 10582747 (-) True G2783
XR_002651630.1 other downstream 944924 10247465 ~ 10359666 (-) False rap1gap2
TU3335 other downstream 1548846 9748932 ~ 9755744 (-) False hspa13
TU4317 other upstream 1431481 12740144 ~ 12758513 (-) True G3297
TU4408 other upstream 1821549 13130212 ~ 13135641 (-) True LOC111197384
XR_002648804.1 other upstream 2816119 14124782 ~ 14132536 (-) False LOC111189390
XR_002648814.1 other upstream 2816465 14125128 ~ 14132536 (-) False LOC111189390
XR_002648788.1 other upstream 2818706 14127369 ~ 14132536 (-) False LOC111189390

Expression Profile