RNA id: XM_007237473.3


Basic Information

Item Value
RNA id XM_007237473.3
length 5678
RNA type mRNA
GC content 0.44
exon number 15
gene id scml2
representative False

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 31024730 ~ 31080764 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGCGCATAGAGCATCGAAATGGCGGCCAGGTCCTGCGAAAAGTACTGAGGTCCGCTGTAATTTCGACAGATTTGTTAAGCTTTGGAGCCTTGGTGAGGGTAATTCAGTACTGAAACAGTGTTCCACAACTGCAGCAGCCGATGAACAGCATGGGCAGAACTGCGTTGAAAGATCAGAAAGACAGTAGGAAGGAGAAGGCAGGCAGGAGTACTCCGGTCAGTGCAGGGCCGGCTCCAGTTAAAGTACCTGAGGCTTTCTCATGGGAGGAATATCTGAAGGAGACGTCGTCTACACCTGCTCCTGCCAGCTGCTTCAAACAGTCTCGCATCCCTCCCTCAAATGACTTCAAGGCTGGGATGAAACTGGAGGCCCGTGACCCTCGGAACTCCACTTCCGTCTGCATCGCCACAGTAATGGGCATGACAGGCATCAGGCTCCGCCTACGCCTCGACGGCAGTGACAACACCAACGACTTCTGGAGGCTGGTGGACTCCGCAGACATCCAGCCAATAGGAACCTGTGAGAAGAATGGAGACATGCTGCAGCCTCCGCTGGGATTCCGGATGAATGCCTCCTCGTGGCCCATGTTCTTGCTGAGGACGTTAAATGGAGCAGAGATGGCTCCAGGTTCAGCATTTAAAAAGGAACCTCTGAGGCCCTCTCAGAATGGATTTAAGCCAGGTATGAAGCTAGAAGCTGTGGATAAAAAGAACCCTTACCTCATCTGCCCGGCCACTGTCGGTGAGGTGAAAGGCGACGAGGTGTTTGTGATGTTTGATGGCTGGCGGGGGGCGTTCGATTACTGGTGCCGTTACGACTCCAGAGACATCTTTCCTGTGGGCTGGTGCACAGTGACCAAACACAGCCTGCAGCCGCCTGGAAACAGCATCACTCTCCCAAAATCGCTCCCAGCCCCTTCCTCGTCCTCCTCTTCCTCGCCGACTAAGCCCACCCGCCGCTCCATGCAGTCATCATACCGCCTGCCTACGCCCCTGCCCCAGCTGCCCGTGAGGAAGGGCGTGAGGGGCCGGCGGCCAAAGAGTGAGACTCTTGCCCTGCTGAAGGCTCTTGCAGCATCCGCCACCTCACCAAATACAGCCGGACCTCAGCCGGACACCCCTGAGCCCACATCACCACTCACCCCACGGCCACCTAAAAAGAGAGGACCCAAACCAGGCAGCAAGAGGAAGCCCAAGATTCTGCAGAGCCCACTGTCACCATCAGCTGGATCTGAGTCCAGACTGCCCCCTGCCCAGCAGCTCAGAGATGGCATGTCTCCGCTTAGCTGCTCCTCCTCATCAGTGGTGTCCACGGtgtgtgtgtatgtaaataaGCATGGAAACTGCGGGCCTCACCTGGACCGGAAACAGGTACAGCGGCTGCCGGATCATTTCGGACCCGAGGCTGTGAACCTGGTTCTGCAGCAGACGGTACAGGCATGTCTGGACTGCGCATACCAGCCCAAAGTGCTGCTGGGATGCCTGCAAAACCAGCCTGATGGGGGAGAGGTGGTCCGAGTGAGAATGGATGGAGGAACACGAATGGTGAAGCTGCCATCTGCCTCCAGCGCCGCGTTCGTTCTGCGTTTCCTGGAGATGATGTGTCGGCACCTGCAGTGTGACAACCTTTTCAGCAGCCAGCCCTTCAGCCCCTGCAGCAGCTACGAGCGCAGCAAGTCAGTAAAAGAAGAGTTATCAGATGCTCCAGCTTTGAACAGAGGAGTGAAGAGAATCTCCAGAGACTCCCCGCCCTACTCTGCCCCACTGTCCCCCAAACTACTACGCACAGATACACATCCCTCAGAAGCTGAGACCCTGCCTCCAGAAGAGAACGGTTTACTGAAGGAGCAGCGCTTCATGGACTCCGCCTCCAACTCCATGACACCCCGCCCACAGACTTTAAGAAGCACCTCTGAGTACCAGTCCCAGTCCAGCAGTCCATATTACCACAGCAGTGGCCCTCCTCTGCGTCGCCATGCCTCCAACCCCCCTATACGCACCCACAGAAGAGTAGAAGCGAGTTCTACTACTGGTCCTGATGCAGCCACTGCAGAGGGTGAAACTcccaggagcagcagcagaagcccCTCCTCCTGGTCTATAGAGGAAGTGATGCAGTTTGTGCGAGATGCAGACCCCACAGCGCTGGCTCCTCATGCTGAGCTCTTTAGGAAGCatgagataGACGGGAAAGCTCTGATGCTGCTCAGGAGTGACATGGTGATGAAGTACATGGGCCTGAAGCTTGGCCCTGCCCTCAAACTCTGCTACCATATTGAGAGACTCAAACAAGGCAAACAATGAAaactgactggaagtgctggaTCCCACCATGTTAGCCATGGTTAACCATGCTAGCTGGATTATACAGAGAGTACTGGATCCCCACATACAGTTCTGAATATTACTCAGTACTGGATTAGGTTTGCGGTGCTGTGCTAACGACACAGTACAGGATCAAATAACACACAGACGGTACTGGTTTGTGGGATAGATTTACAGTACTGGGAGAATGACACAGTGCTGGACCAAACACTTACGTCACATGACTCTGTACTGCTACACATCCAACCTACCAAACAGTGCTGCAGCTAGACAAAGACAAAGGCTTCCCATCGGGGGAAACGAGGGGCTACAGACTCCACAAGCATGTCAGGAGGAATAAACCTTAAAGAGGATAAACGTGCAGAGGCAGCAGACTGAGCGCTAATGCAGTCAGTGCACAGGGAGACACACCGCTGTGAAGAGAAGGATCTGGGCAGCAATAAAGTCCTGCACacactacctacctaccactgGAGATGAACAGAGCCTGGACAAGGAAAGACCAGAGGAAAGCTGAAGTGGATGGGTGGATGCTTCTCtcttataaatgtttttctttttctgcataTCATCAGTGTTGATTCaaaatcttgatttttttttttttttgtaaatttgtagaTTAGACTGCTTCATGCTCTTTGCATTGTGTGAAGGACTGGTCCAAAACAAATTGCTATAAAATCATGTGACATTGATATATTATATTGGTATAATTTATTTCCCTTTAAAATCAAATTACAATGATTACAGCattgtatacattttaattacttttttttatttgttttttattttattttcctgttttctACAGGAAAAACTTTTGCAGAGTTTTTCTGAGTAAAGACCCAAAACAACTTGGTATAAGATCATGTGACACTGATGTttaatttacaattattacaagaTTTTATTGCAAAAAGGACGATTTGCAGCTTTccgtttagttttttttttttttttttccaaaaataaatTGGCCTCTTTTACTTTTCTCCAGGAACAAGTATTTAAACATGTCAAAACTTAATTTTGGATCTGATACAAGATGAAGATTCTCCCAAAGATTTTGAACTGTTCTTGGAtcattttgctgttttcctttttttgtttgttttcaccaTTGTTGGATAGTTCTGACATTCTGGTGATGAACACCATGAGCTTTTCATCTCCCTACCTCTCTCTGTAATCCAGAATCAGAGAATCGTTCGAGTTCACTGGCTGAAAACTGAACAGcactgtatgtttgtttgtttgttttttttcatctttttattttattgtttttaattcttatttCGAATACAATCAAGTTTTGATATGATAGTATTGATCGTAGTATTAATTGATGAGTTGTTGAAGTTGCTTTAACAGGAGGCCACTGTTAGTTCATCGTTATTGCCCCCAAAGCAGATATGCAGCTTACCAAATAGCTACCATTCAGAACATCTAATATACACCCACATGCAATATGTAATTAACTGGGACAGGAAGCTAAAGAATATATCTCCCCTGCGCTGACCTGCGGGGGATATGTGGATCTTGCCTCCTGCAGTGAACATGgagtcacttgtctgttcacatgaaCAATTGTAGCCAGAAGccgctggtcacgatcattaccaccgtAATGAGCAGgaccactgtccactgtgggtggtaattccTTGTAGGACACTGTGGTGGTAAACAATGAGAAAATCGAGATAAATACCTGCACAGCACATCCCATCCATATAATACCTGCTGTCAGACATCAACTCTGCCCTGAGGTAAAATTTCTGCTGTCCAATAACTTCTGgtgtaaatatttacatatagtAGCATGAGTTCCAAGAGGAAATCATGTTGAACCAAAGCAATTGTCAGAAGATTTGGGATTTTGGGGTCTATTAattgtgtataaataaataatcagttaaATGAATAGTGTCAGTCTATTAGAGAAACACAGCTCACAGTTGTGCTCCAGTCTTCACCCATGAGAAGTTTCACaagtaaatagataaaaaagttttatatctatgaatattttattaacttGTAATTATTTCCATTCCTTTATGCCTAAAGAGGCAAGACCACTtctgtttgctgtttttgtcTCCATGCCCtgttttgttctcttttttctattatttattttggaatAATGAGAGTAGATATCAGTGATATTCTGATGACGCTTAATCATTTTGAAGGTTTGGAACTTCTGCTGAAGCTTTGTTACCCTTTATTTTCCAGTTAACGTCACtttgttatttttcttgttgttaTTCTGGGAACTGTCGGGTTTGTACTGTCAGTAACGGGAAGTTCTCGTTGTGTCATTTGTTCTGGTGAAATCTTGCTACGGTTTGAGGATTTGCATGGATACATGGATCCGGTTCATGATGTATATTCTTACTCTGTGTGTAGACAGTGCATATTTTGGCAGGATCTCCGAGATGCTGCTTGTGTTGTTTTGATACAGTCCGTTCTGCAGGTTCTTCGAGTCCCGCAGTCACTTTCTTACCCCCGAACAAGGAGAACTGCTCTTTTGTCGTCGACACATTTCAAAGGGATGTTGATGAGTTGGTGATTCGGTGTGGTGTGAACACCAGCGAGAAACAATCTCCATCGCCTGCTCAGACTCCTACAGCTATGGCTTTGAGTCACATAAGAATTGTCATCGTCTTTGTAGATGGGACAGAGTTCATCAGTGTATTATGGGTTTCACCATAAAACGCAGCAACAGGAATGTACATTTTTTGTagaaaagaaatattttaaactaaaccTATTGTATATGAAAGTAGAAATGTGAAGGTATGCTTTGGAGATGGGAGGCCAGAGGGGATTGGTATTGTCAAAAGTCTATCTTGTACTGCCTTCCAATACTTTATACTGCGCTTATAAAGTTCTGTCCATTTTAAATAACTACATGGAAATTGCCTTGCTTTACTTTTGAGATTTCTCAGGTTTAGTAGACTTTGTTTGAACTAGACTTTTGTAACGTAGCATTTCTGCTTAACGTgttagttttcatttttaggCTTGTTTTcatgttctgttcttttttttttttctttctttaaatttgtgtttttgttctgttttttttttttgtaaatacttGTGCCATAGTTAATTAATACTTGCTATGCTCTTTCAAACTACccaatgtgttaaaaaaaagtaaaaaaaaaaaaaaaaaaagatgcaaaagaaGTTCAAAACACTCAGATGTTCAGATGTTAATagacatttttaatcattacatttttaaaaggtaatGCACCCCTCACATACacatttttccacattttaaatgatacaaataagaataaataaataatttaaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184585 lncRNA downstream 17086 30998167 ~ 31007644 (-) False G136463
TU184587 lncRNA downstream 17086 30998167 ~ 31007644 (-) True G136463
TU184552 lncRNA downstream 48430 30975917 ~ 30976300 (-) True G136439
TU184548 lncRNA downstream 55709 30968702 ~ 30969021 (-) True G136435
TU184540 lncRNA downstream 76948 30947273 ~ 30947782 (-) True G136427
TU184679 lncRNA upstream 99576 31180340 ~ 31236709 (-) True G136541
TU184696 lncRNA upstream 144142 31224906 ~ 31229042 (-) True G136554
TU184694 lncRNA upstream 145474 31226238 ~ 31228432 (-) False G136554
TU184695 lncRNA upstream 145474 31226238 ~ 31229312 (-) False G136554
TU184698 lncRNA upstream 149810 31230574 ~ 31232394 (-) True G136555
XM_022677550.1 mRNA downstream 339903 30658222 ~ 30684827 (-) True LOC103041051
XM_007228960.3 mRNA downstream 376996 30635176 ~ 30647734 (-) False LOC103034470
XM_007228961.3 mRNA downstream 376996 30635176 ~ 30647734 (-) True LOC103034470
XM_022677549.1 mRNA downstream 377151 30635176 ~ 30647579 (-) False LOC103034470
XM_007228963.3 mRNA downstream 391860 30610314 ~ 30632870 (-) True LOC103035433
XM_007237476.3 mRNA upstream 156508 31237272 ~ 31245744 (-) True rs1
XM_007233408.3 mRNA upstream 1391906 32472670 ~ 32501687 (-) False LOC103041895
XM_022677555.1 mRNA upstream 1392510 32473274 ~ 32501687 (-) True LOC103041895
XM_007233413.2 mRNA upstream 1976734 33057498 ~ 33098161 (-) True epm2a
XM_022677564.1 mRNA upstream 2024359 33105123 ~ 33116783 (-) True LOC103043549
TU184211 other downstream 969002 30048281 ~ 30055728 (-) True G136173
TU183933 other downstream 1744038 29274161 ~ 29280692 (-) True LOC103038817
TU183860 other downstream 1903059 29067891 ~ 29121671 (-) True G135910
TU183807 other downstream 2213093 28809323 ~ 28811637 (-) False LOC103037426
XR_002650939.1 other downstream 2946808 28068697 ~ 28077922 (-) False LOC111194130
TU184848 other upstream 1286429 32367193 ~ 32367462 (-) True G136691
TU184957 other upstream 1702310 32783074 ~ 32784304 (-) True G136773
XR_002650953.1 other upstream 2407114 33487878 ~ 33511025 (-) False pi16
TU185281 other upstream 2466591 33547355 ~ 33550978 (-) True G137043
TU185350 other upstream 2682710 33763474 ~ 33763827 (-) True G137098

Expression Profile