RNA id: TU327293


Basic Information

Item Value
RNA id TU327293
length 2452
RNA type TUCP
GC content 0.41
exon number 3
gene id rbbp6
representative False

Chromosome Information

Item Value
chromosome id NW_019171083.1
NCBI id APWO02000681.1
chromosome length 507258
location 436939 ~ 453661 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAACCCCGTGTAGGCGAAGTCACGTTAGCACTGCTAGTCAGCTCGAGAGTGGAGGCGGATTAAATTCAGTTTTCAGGATCTTTTTTCAGCACGTTTTGGTTGGAAATCAGTCTGcgtgtttttttaatcagcgGAGTAGTCGCTCAGGAGTCCAGGTTTGCTGTGTTCCGGTGTATGTCTGCGTGTGAATTCATCGCTCTGCGTCTTTGTGTGTCGCTGGTTGGAGGCCATTTTAGGCCGCTTGCTCCAGAAGCTTCGGCGGAGCGGTTTTGGTGATCCAGGATCGAAGGAGCGCCCGGGCGGCCCCGTGTTGCCTCCCACAGCTCCTGGACTGACTGCGAAAAGACTGCGTGTAAAAGTCGCACGAGAGCGGACTGTGTGCGGCTCGTAGCGGGCCGGGGACTCGTATCCGGACTTTCGGGGGGATCCCCTTTGTTTACCAATCAATTTGGACTTGCGGTCCCACTTCGGGAGCTCTGACTCCGGCTAGGACCGGCCGGATCCGTCCCGGTGAGGCGGTGGTGCCGAGCTTTCCGCCCAGCTGCGATGGCTGGCGGCCCGGCTCAGACAGACTGCTGAATCGGTTCTGTTTGTGCTGTTCTCTCCGGGGGAGGGTTTGggttctgtgtttgtttttttgctgtgagATTTTGGGGggatttgtgtaaaaatgtcttgtgTTCATTATAAGTTTTCCTCCAAACTCAACTACGACACGGTGACGTTTGATGGGCTGCACATCACGCTGACCGAGCTGAAGCGGCAGATCATGGGCCGGGAGAAGCTGAAGGCCGCAGACTGCGACCTACAGATCACCAACGCCCAGACTAAAGAGGAGTACACTGATGATGGGGCACTTATCCCTAAAAACTCCTCGGTCATCATCAGGCGCATCCCGATTGGTGGAGTTAAAGCTGCCAGCAAAACGTTTGTCATTGATCGATCTGAACCCTCAAGTGGATCTTCAAAAGCAGTATGTAGCACCAACTCACCATTtgcctcacacacaaacatacacccACATTTGCTTCCAGTCGAAATGATACACACTTCGTTTCTTCCTCTTTATTGTTGTGGAACATTACGCTGTAAGATGTAATGGAGTTGTTAATTTGCGTTTCTGCTAAATGCAGATTGTGTATGGAGCTGCATGCCTCTGCACTGTATTTCACACTGAAACTAAGAACCGTGATGAGCTGAAAAGTTGTacatttttatgtactgtactGATCATATTGATCGTTATAGTAAGAGTTGAACATGATAAGTGTTCAGCCTGTTTGTCTGCTTCTGGTAAATACTGTAAACaatgtctgtttgttttttaataaaaaaatatatatggtttttatttttttaacacctgATATCACACAGCGTCAGTGTCCATGTTTACCCACTTTGATCGAATATGCaagtgtgcgtgcgtgtgtgtacgTATGTACATCTGTTTGTATGCATGGGTTAAGTTCTGTTAAGTTGTTGGTTAGtggtaaaatgtaataaaataattgaagttaatagtaattaatagtaatactaTTAAAGATCAGCTGTGTATAttcaaataatcaaaaatacaaTGTCACATGTCGTGTCAGTTTGAGTGTAGATAACTATATCCTGTCACAAGCTAACATTGCCCTTAATACCTAGCATACTTGTTAGTATAAACTACcgtactcaaaaatataccctttttattttaatacctCTGCTGGTATAAAGCTAGCTAAGGGTCTATACTGTTGCCTTCAGAAAATGTTACTGCATTCTGAACAAGCTCATTTTTATTAGCCAGCTTGCTAACTAATAGAAACATGGAAGCTAACATTTTAAGGCTGATTTCATTAGCTATAATAAACTGCCTAGGTTAGTTCAGGATTAGCTAGAACAAACAAGGAATTTTGCTAGTTTTGTGTTACTCTTGGTAAGTTGGCTGACATCTGCACTAACCCAGCTGTTAGAGTATGTTTCTGTGATGTGTAACaaagatgaataaaaaaaaaaaatcactcttaATGTACTGCCCCCACTGCATTAATTTCTTTAAACACAATCTTTTTTCTAAGGTAGCTGTGTATCTTAAGTTTTGTGAGTACTTCctctttggcttttttttttttaataaaaatatctagTTTTTTGGACCACTGATTTGAAGTAGAGTAGTAGTTTTTCTCAAGTTTTCACATGACAGACTAAAGGTAAATGTTGGTGTTGTCAAAACAGCAGGTgctcattttaaaattttaggTTTACGATATTTAGTAGtattctggtttattattattatcattattattattattactgctaCTACAGCAATTTTCTCTTTAAGAACTGTTTCTTTTGTAAGCAAGTTGGCTATTTTTACAGAACAGGGTTGGTGACTGACCTATTTATTCATAGTgacactttttttgtgtttttgtaatgttattattttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327300 lncRNA downstream 2580 414735 ~ 447625 (-) False G240202
TU327337 lncRNA downstream 17944 431393 ~ 432261 (-) True G240224
TU327331 lncRNA downstream 27014 422262 ~ 423191 (-) True G240220
TU327298 lncRNA downstream 29723 415064 ~ 420482 (-) True G240202
TU327305 lncRNA downstream 30885 414735 ~ 419320 (-) False G240202
TU327344 lncRNA upstream 15406 469067 ~ 469685 (-) True G240230
TU327345 lncRNA upstream 16346 470007 ~ 470540 (-) True G240231
XM_022686367.1 mRNA downstream 87174 304845 ~ 363031 (-) True tnrc6a
XM_022686359.1 mRNA downstream 153483 288179 ~ 296722 (-) False rpusd1
XM_007241560.3 mRNA downstream 154323 288179 ~ 295882 (-) True rpusd1
XM_022686374.1 mRNA downstream 261436 170259 ~ 188769 (-) False traf7

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU146017 True 2621 TUCP 0.39 3 CM030135.1 11966247 ~ 11970778 (+)