RNA id: TU424285


Basic Information

Item Value
RNA id TU424285
length 540
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G308170
representative True

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 616288 ~ 674325 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctcccacatccagctctatctgcgattctcacagtaacaactacaatacccagaacgcaccactccatgacacaacacacactcccgatcacatgtcacgtcacatgacgccaccaggaagccccgagtactgattactcagagtatttaaggaccatgctcacgctcacacctcgccgagtatctgtttggtaatcctacaatacaaagcgtttctcttgcccttgctattttccgtgtatgatcctgtttttgttttctaccgactttgatttttgcctgctcccttgtgttggattaccgtgtatgacctggactgtttattgtactctggatttttgcctaccctgtgatactgcctacccgtgtatgaactctggactgtcctccggttatggtatggtttctctacactgtgcatttttggtactgaccctgtttctgttgactacccctgtctactctataactttaataaaagttattttattgtatctgcaccagtctcattcctgtctggccctgacaaTTTAAAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424283 lncRNA upstream 1369 614624 ~ 614919 (+) True G308168
TU424269 lncRNA upstream 37393 567535 ~ 578895 (+) True G308156
TU424231 lncRNA upstream 217014 398957 ~ 399274 (+) True G308124
TU424220 lncRNA upstream 303512 309971 ~ 312776 (+) True G308113
TU424219 lncRNA upstream 322530 293408 ~ 293758 (+) True G308112
TU424294 lncRNA downstream 6325 680650 ~ 680889 (+) True G308178
TU424316 lncRNA downstream 109887 784212 ~ 785102 (+) True G308194
TU424315 lncRNA downstream 110088 784413 ~ 785102 (+) False G308194
TU424305 lncRNA downstream 118519 792844 ~ 848432 (+) True G308187
TU424322 lncRNA downstream 162443 836768 ~ 837228 (+) True G308200
XM_022665971.1 mRNA downstream 109150 783475 ~ 841687 (+) True fam168a
XM_022665975.1 mRNA downstream 109150 783475 ~ 841687 (+) False fam168a
XM_022665972.1 mRNA downstream 109150 783475 ~ 841687 (+) False fam168a
XM_022665974.1 mRNA downstream 109150 783475 ~ 841687 (+) False fam168a
XM_022665973.1 mRNA downstream 109150 783475 ~ 841687 (+) False fam168a
TU424184 other upstream 430213 185337 ~ 186075 (+) True G308090
TU424711 other downstream 1343139 2017464 ~ 2020131 (+) True G308506
TU424747 other downstream 1456754 2131079 ~ 2143963 (+) True G308535
TU424887 other downstream 1645566 2319891 ~ 2338166 (+) True G308643
TU424927 other downstream 1882002 2556327 ~ 2556569 (+) True G308680

Expression Profile