RNA id: TU424294


Basic Information

Item Value
RNA id TU424294
length 240
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G308178
representative True

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 680650 ~ 680889 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaacgggccaaagagtctaaaagcggagagagtgcgtatttctagcacagaaaaacgggccaaagagtctaaaagtggagagggtgcgcatttctagcgcagaaaaacgggccaaagagtctaaaagtggagagggtgcgcatttctagcgcagaaaaacgggccaaagagtctaaaagtggagagggtgcgcatttctagcgcagaaaaacgggccaaagagtctaaaagcggagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424285 lncRNA upstream 6325 616288 ~ 674325 (+) True G308170
TU424286 lncRNA upstream 53626 616288 ~ 627024 (+) False G308170
TU424283 lncRNA upstream 65731 614624 ~ 614919 (+) True G308168
TU424269 lncRNA upstream 101755 567535 ~ 578895 (+) True G308156
TU424231 lncRNA upstream 281376 398957 ~ 399274 (+) True G308124
TU424316 lncRNA downstream 103323 784212 ~ 785102 (+) True G308194
TU424315 lncRNA downstream 103524 784413 ~ 785102 (+) False G308194
TU424305 lncRNA downstream 111955 792844 ~ 848432 (+) True G308187
TU424322 lncRNA downstream 155879 836768 ~ 837228 (+) True G308200
TU424307 lncRNA downstream 167036 847925 ~ 923218 (+) False G308187
XM_022665971.1 mRNA downstream 102586 783475 ~ 841687 (+) True fam168a
XM_022665975.1 mRNA downstream 102586 783475 ~ 841687 (+) False fam168a
XM_022665972.1 mRNA downstream 102586 783475 ~ 841687 (+) False fam168a
XM_022665974.1 mRNA downstream 102586 783475 ~ 841687 (+) False fam168a
XM_022665973.1 mRNA downstream 102586 783475 ~ 841687 (+) False fam168a
TU424184 other upstream 494575 185337 ~ 186075 (+) True G308090
TU424711 other downstream 1336575 2017464 ~ 2020131 (+) True G308506
TU424747 other downstream 1450190 2131079 ~ 2143963 (+) True G308535
TU424887 other downstream 1639002 2319891 ~ 2338166 (+) True G308643
TU424927 other downstream 1875438 2556327 ~ 2556569 (+) True G308680

Expression Profile