RNA id: TU424305


Basic Information

Item Value
RNA id TU424305
length 502
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G308187
representative True

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 792844 ~ 923218 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cagaactgttctcttaccctgctaattgaaccttcacactctgctcttactggtgcaataatgtgcaattaatgaagattggccaccaggctgctccaatttagccatgaaacctcccacactaaaatgacgacaggtgtttcagtttcattgtccaacccctgtagcttCTGCTGCATTCTGATCATCACTGTATCATCACATCACATTCTGCTCACCTGCTTATATAACAGGTTCACTACACCTGTTTATAGAGTGCAGTTTATATCTCTCTTTTAGATCTGAATGAGGAGTGAGGAGACCCGGTCCAGGCTTGTGATATGACGTGTAAATCTGTTTTTATCACTtttaatttgaatgtttttatttttctaatttgggtttttttgttttttttcctttattttggaAGATCAGTTAGTGATCTCAGTGACAGAATTAAGCCAAGTTTGTAATTgtataatatttactgtaagaTGTAGAACGTTCaataactattaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424316 lncRNA upstream 7742 784212 ~ 785102 (+) True G308194
TU424315 lncRNA upstream 7742 784413 ~ 785102 (+) False G308194
TU424294 lncRNA upstream 111955 680650 ~ 680889 (+) True G308178
TU424285 lncRNA upstream 118519 616288 ~ 674325 (+) True G308170
TU424286 lncRNA upstream 165820 616288 ~ 627024 (+) False G308170
TU424339 lncRNA downstream 92735 941167 ~ 941932 (+) True G308215
TU424342 lncRNA downstream 105069 953501 ~ 956767 (+) True G308218
TU424346 lncRNA downstream 142663 991095 ~ 991633 (+) True G308222
TU424347 lncRNA downstream 163995 1012427 ~ 1014227 (+) True G308223
TU424302 lncRNA downstream 225869 1074301 ~ 1126340 (+) True G308185
XM_007257757.3 mRNA downstream 10616 859048 ~ 887291 (+) True p2ry6
XM_022665978.1 mRNA downstream 46428 894860 ~ 1072523 (+) True arhgef17
XM_022665977.1 mRNA downstream 236001 1084433 ~ 1155289 (+) True relt
XM_022665979.1 mRNA downstream 331125 1179557 ~ 1333842 (+) True LOC103036410
XM_022665982.1 mRNA downstream 492035 1340467 ~ 1352751 (+) True LOC103036707
TU424184 other upstream 606769 185337 ~ 186075 (+) True G308090
TU424711 other downstream 1169032 2017464 ~ 2020131 (+) True G308506
TU424747 other downstream 1282647 2131079 ~ 2143963 (+) True G308535
TU424887 other downstream 1471459 2319891 ~ 2338166 (+) True G308643
TU424927 other downstream 1707895 2556327 ~ 2556569 (+) True G308680

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00027211 True 5968 lncRNA 0.36 2 NC_007129.7 2935623 ~ 2941879 (-)
rainbow trout (Oncorhynchus mykiss) TU122418 True 476 lncRNA 0.44 2 NC_048566.1 4455510 ~ 4456381 (-)
rainbow trout (Oncorhynchus mykiss) TU2207152 True 4203 lncRNA 0.44 4 NC_048588.1 40020748 ~ 40025121 (+)
eurasian perch (Perca fluviatilis) TU122418 True 832 lncRNA 0.34 2 NC_053119.1 39425296 ~ 39426186 (+)
striped catfish (Pangasianodon hypophthalmus) TU122418 True 7857 lncRNA 0.36 2 NC_047600.1 22928169 ~ 22936046 (-)
tiger barb (Puntius tetrazona) TU188266 False 1827 TUCP 0.39 2 NC_056716.1 18777768 ~ 18841535 (+)
mexican tetra (Astyanax mexicanus) TU188266 True 363 TUCP 0.41 1 NC_035912.1 5276106 ~ 5276468 (-)