RNA id: TU424342


Basic Information

Item Value
RNA id TU424342
length 231
lncRNA type intronic
GC content 0.36
exon number 2
gene id G308218
representative True

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 953501 ~ 956767 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atctctctctctctctctctctctttatggaaTATTTATTGAAAACTGAACATTTTATCACCCCAGCAGCCACACAGAAAAAGCACaatctgaccaaaaaaaatcagttactaattacttgaatttcttgtctcttaataaagtgtttgagagcattagttAAAGTAGTGAAgacgtacaggggttggacaatgaaactgaaacacctgtcatcattttagtgtgggaggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424339 lncRNA upstream 11569 941167 ~ 941932 (+) True G308215
TU424307 lncRNA upstream 30283 847925 ~ 923218 (+) False G308187
TU424305 lncRNA upstream 105069 792844 ~ 848432 (+) True G308187
TU424322 lncRNA upstream 116273 836768 ~ 837228 (+) True G308200
TU424316 lncRNA upstream 168399 784212 ~ 785102 (+) True G308194
TU424346 lncRNA downstream 34328 991095 ~ 991633 (+) True G308222
TU424347 lncRNA downstream 55660 1012427 ~ 1014227 (+) True G308223
TU424302 lncRNA downstream 117534 1074301 ~ 1126340 (+) True G308185
TU424313 lncRNA downstream 146992 1103759 ~ 1160735 (+) True G308192
TU424354 lncRNA downstream 148328 1105095 ~ 1106153 (+) True G308228
XM_007257757.3 mRNA upstream 66210 859048 ~ 887291 (+) True p2ry6
XM_022665975.1 mRNA upstream 111814 783475 ~ 841687 (+) False fam168a
XM_022665977.1 mRNA downstream 127666 1084433 ~ 1155289 (+) True relt
XM_022665979.1 mRNA downstream 222790 1179557 ~ 1333842 (+) True LOC103036410
XM_022665982.1 mRNA downstream 383700 1340467 ~ 1352751 (+) True LOC103036707
XM_007257759.3 mRNA downstream 396995 1353762 ~ 1361925 (+) True rps3
XM_007257761.3 mRNA downstream 406947 1363714 ~ 1366089 (+) True kctd14
TU424184 other upstream 767426 185337 ~ 186075 (+) True G308090
TU424711 other downstream 1060697 2017464 ~ 2020131 (+) True G308506
TU424747 other downstream 1174312 2131079 ~ 2143963 (+) True G308535
TU424887 other downstream 1363124 2319891 ~ 2338166 (+) True G308643
TU424927 other downstream 1599560 2556327 ~ 2556569 (+) True G308680

Expression Profile