Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00012264 |
| length | 801 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 3 |
| gene id | XLOC_006260 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 48358467 ~ 48381055 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006298 | mismatch repair | biological_process |
| GO:0036297 | interstrand cross-link repair | biological_process |
| GO:0043570 | maintenance of DNA repeat elements | biological_process |
| GO:0016446 | somatic hypermutation of immunoglobulin genes | biological_process |
| GO:0016447 | somatic recombination of immunoglobulin gene segments | biological_process |
| GO:0006974 | cellular response to DNA damage stimulus | biological_process |
| GO:0045910 | negative regulation of DNA recombination | biological_process |
| GO:0000710 | meiotic mismatch repair | biological_process |
| GO:0008630 | intrinsic apoptotic signaling pathway in response to DNA damage | biological_process |
| GO:0006281 | DNA repair | biological_process |
| GO:0006290 | pyrimidine dimer repair | biological_process |
| GO:0032300 | mismatch repair complex | cellular_component |
| GO:0032301 | MutSalpha complex | cellular_component |
| GO:0030983 | mismatched DNA binding | molecular_function |
| GO:0032357 | oxidized purine DNA binding | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0000400 | four-way junction DNA binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0032405 | MutLalpha complex binding | molecular_function |
| GO:0032137 | guanine/thymine mispair binding | molecular_function |
| GO:0003690 | double-stranded DNA binding | molecular_function |
| GO:0032143 | single thymine insertion binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0008094 | DNA-dependent ATPase activity | molecular_function |
| id | description |
|---|---|
| ko03430 | Mismatch repair |
| ko05200 | Pathways in cancer |
| ko05210 | Colorectal cancer |
| ko01524 | Platinum drug resistance |
| ko03400 | DNA repair and recombination proteins |
| id | description |
|---|---|
| ZDB-GENE-020905-3 | Enables guanine/thymine mispair binding activity. Acts upstream of or within maintenance of DNA repeat elements. Predicted to be part of MutSalpha complex. Is expressed in several structures, including central nervous system; immature eye; neural tube; optic primordium; and ventral mesoderm. Human ortholog(s) of this gene implicated in Lynch syndrome; colorectal carcinoma; endometrial cancer; hereditary nonpolyposis colorectal cancer type 5; and mismatch repair cancer syndrome. Orthologous to human MSH6 (mutS homolog 6). |
| ensembl_id | ENSDART00000162531 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00013684 | lncRNA | upstream | 294229 | 48063125 ~ 48064309 (+) | False | XLOC_006259 |
| TCONS_00013685 | lncRNA | upstream | 294229 | 48063128 ~ 48064309 (+) | True | XLOC_006259 |
| TCONS_00013681 | lncRNA | upstream | 904630 | 47189134 ~ 47453908 (+) | True | XLOC_006249 |
| TCONS_00013686 | lncRNA | downstream | 182123 | 48552706 ~ 48556760 (+) | False | XLOC_006262 |
| TCONS_00013688 | lncRNA | downstream | 182370 | 48552953 ~ 48556760 (+) | False | XLOC_006262 |
| TCONS_00013687 | lncRNA | downstream | 182370 | 48552953 ~ 48556760 (+) | True | XLOC_006262 |
| TCONS_00013689 | lncRNA | downstream | 198404 | 48568987 ~ 48587143 (+) | False | XLOC_006263 |
| TCONS_00013425 | lncRNA | downstream | 208351 | 48578934 ~ 48587410 (+) | True | XLOC_006263 |
| TCONS_00012260 | mRNA | upstream | 519173 | 47821524 ~ 47839365 (+) | True | XLOC_006256 |
| TCONS_00012259 | mRNA | upstream | 542490 | 47810211 ~ 47816048 (+) | True | XLOC_006255 |
| TCONS_00012258 | mRNA | upstream | 630927 | 47710434 ~ 47727611 (+) | True | XLOC_006254 |
| TCONS_00012256 | mRNA | upstream | 666828 | 47623916 ~ 47691710 (+) | False | XLOC_006253 |
| TCONS_00012267 | mRNA | downstream | 111673 | 48482256 ~ 48551810 (+) | True | XLOC_006261 |
| TCONS_00012268 | mRNA | downstream | 247391 | 48617974 ~ 48652585 (+) | True | XLOC_006265 |
| TCONS_00012272 | mRNA | downstream | 805041 | 49175624 ~ 49206649 (+) | False | XLOC_006271 |
| TCONS_00012273 | mRNA | downstream | 805364 | 49175947 ~ 49206713 (+) | True | XLOC_006271 |
| TCONS_00012275 | mRNA | downstream | 1356750 | 49727333 ~ 49769372 (+) | False | XLOC_006274 |
| TCONS_00012262 | other | upstream | 312310 | 48046112 ~ 48046228 (+) | True | XLOC_006258 |
| TCONS_00012261 | other | upstream | 454356 | 47904068 ~ 47904182 (+) | True | XLOC_006257 |
| TCONS_00012254 | other | upstream | 1222684 | 47120482 ~ 47135854 (+) | True | XLOC_006247 |
| TCONS_00012252 | other | upstream | 1308512 | 47049912 ~ 47050026 (+) | True | XLOC_006248 |
| TCONS_00012251 | other | upstream | 1315575 | 47039477 ~ 47042963 (+) | False | XLOC_006247 |
| TCONS_00012270 | other | downstream | 532362 | 48902945 ~ 48903059 (+) | True | XLOC_006269 |
| TCONS_00012271 | other | downstream | 612103 | 48982686 ~ 48982800 (+) | True | XLOC_006270 |
| TCONS_00012280 | other | downstream | 2150085 | 50520668 ~ 50521600 (+) | True | XLOC_006285 |
| TCONS_00012281 | other | downstream | 2232056 | 50602639 ~ 50602714 (+) | True | XLOC_006286 |
| TCONS_00012283 | other | downstream | 2423173 | 50793756 ~ 50793872 (+) | True | XLOC_006288 |
