RNA id: TCONS_00012279


Basic Information

Item Value
RNA id TCONS_00012279
length 7630
lncRNA type lincRNA
GC content 0.37
exon number 4
gene id XLOC_006283
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 50481817 ~ 50517225 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAATCAACATGCATGCATTTCTTTTCTCCCACACTCTCGTATGCATGCATGTTAAAGCGCGTGTAATAAACAGCGCAGAGTGACGCATTAACAGCCTCTATATGGCCGTTATAAACAATGCAGCGTGTAAAAAGAGGAAGCACATGCTATCTCCACTTCTCTGTCATGCACAAAGCATCAAATCTACAGCCGCATGAATGAAACAGCATGCAACTCCATGCACGATCAAATAAGCATGCCTCTGAGCGCCAACAGAAACGAAACGCATGCAATTTAGGGCATGCAATTAGATATAAGTGTGATGTGGCACGCAGGTAATCCACTTTTGTCATGGACTTGAGCTCTTTTTGTCCCCGGATTGAACTGTCATGGCTGCCGTACACTGTTGACTGATCCTGACTGGACTGCTGGAGGCGGAAAAGCAGTGGGTCTGTATAGCCAACATGAATGGGGTCAATGCCAACCCTCACACTCAGGTTGAAAAGGAGGAAACGGGCATTTGGCACAAACGCCTGCGTCTCAGGAAAACCTCCTTTTCTGATCAAAACACTGTGAAGGAGGAGAACAATGTTACTACATGTGAAGAGAAAGCAACAGGGGAGTCCAAGAAACGAGCGCTGAACACTTTCACCTGCTCCACATGCAACGACGGCATCTCCTTTAAACCTGGAGAATTAATCACGCACTTTAAGGTCATCCATGGAGGCGAAGGAAACCCACCGATGTTTCCATGCAGCATGTGTGATTTCTCCACATCAGTGTTTATTACGCTTCAGAAACACCGAATGAAACACAAGGACTGTTTGTTTACTTGTGATAGTTGTGAAGATGACGTTCAGCAAACATTGCCTCAACTAATCAAACATATTCAAACACATCACTCCCTCGATGGCCAATTCTACTGTACCAAATGCAAACTCTCTATGCAGGAAATTGAGCAGTTTGTGTGTCATTCTTGTCCACAACCAGTCAAAAGCAAGCATGAAGAAAGCATCACTAATGGTGTGAAGTTGGAGACGCCACAGAAAAACGATCTCCTACAACACATGGCTGCTGCGTGTCGGCGAAAATGGAGCCgaagaaattggtggaaaaagcGAGAATCTTCTTCAAAAGAAGAAAACAATAACTTATCCCAGGAGTTGAAGCTTCTGCATCCTAAACCAGAACCCAAATGGCCGTCCACTTTACTGGACACCAATGGCATCTTAGTGGATCCAGAGAAGACTTTGGAAGAAACGAAGCAGTTTCTTGAAAGAACGGTTGTTAGTGGTAAGAAGTGGAGCATGTCTCTAAAAGATGAGCAGGACTTTGCTCCCCCACATTTAAATGGGATAAACCATTGGCGTGTTGGGAAAGATAAGATATCCGGACTGATGGAGAAAAACAATATAACCGTTCCCCCAGATTGCACTACGAAAGTGGTCGGATTCAAGATGGTGGACGGCAAAAAGCATTTAGTCCTCAGAGTCATTCCTTCAGACAAGCAAGATGAGGCGTTCAGATCTAACACTGtgaaaccaaccaatcaatcttCGGTTGAGCCAAACGACACTGTTAAAGCTTCAGGAAACTGTTCTCAGGGGACTCCGGAAAGGATTTTATCCCCGGGACGATGTGCAACTCAACATAGCATTTCATCGTCAGTGATTGAGAGATGTAATAGCCAACAACAAGATGTCTACGATAACCGGGACTTCAATAACCTCCAACATAATCCAGTCAGAAAGACCAAAACAACCAATCTACGGTCCTGTGATGAAATAAACACTCATGCAGAACATCCAAAAGAGCAAGAAAAGCCTCTCAGTGGGTCAGAGCAAAACTCTAATGAGGATCTGAGCTCTGATGTGGGATCTGCGCAAGAGAAACGCGACCTGGCattggatccaaatgcagatcTGTGCTCCACTTTTGGGTTTGATTGCATTAGTCCATCTTTGAATAACCTGAGCGAGTCATTGTGTGGTTTTCAAAGTGCAGATGGAGGATTGTTATTCCACAGCGAAAGCACAAACAACTGCGACCCCAGAGAGGCTGCTGTGTTCCCGGTGGGTCAGTATGACTGCGAGAGGGAGAATCTGTGTGTTTCAGAGCTGAATCAGACGGTGGAGGAGCTGCCTTTGACTACAGTCAGACACTTACTGGATGAGTCTTCAAGTTCGGATGAACCACAGAGAGACTCAGCATGCACTGGAGGAACAATCGAGCGACATGAGCCAGAAAACACCAGCATCATCTTCTCTGAGGATTCAGACTCGTCCACAACTGTTCCTGAGTCAGCCGCCGGCTCCATTTCATCACTAAACAGAAAGCGCATGGGAGAAGAATCCTCAACAGACTCCCAACAACAACCCGTCAGTAAATCCCCAAAGCCATCCATTCTCCATTGGGAACCGGCGTCTCGAGACACTCCGACAACCCTTCGACTGATTCCCTTCAATTCCACACAATCCCTCAAAATCCCTGCTGAGAACCAACCCGTTATAGTCCTCAACCATCCAGATTCTGATATCCCCGAAGTGACGAACATCATGAAAGTCGTGCACAAACACAAAGCTGCGATCCAGCGTGTGGTTTTGTCTCGTAAAACTCTCCGTGCGCTGTCGGAGTTTAATTGCAATGCATTCATTTCAACGAATCTCCTCACCAGTTATCACTATAGGAGGGAATGGCCAAATAGCAGCGTTAAGGAGAGATTCAGCTTGAAACTGAGACTCAAAAGAGTGCGTGGAAGAAAGTATACCGTGGTGCCGACGCTATCAGAAAGCGCTGTTCTGCAGCCGACGTTCACATGCTGGTTTTGCGGGCGTGTTTTCAGGAATCAAGAAGCTTGGGTTGGACACGGACAGAGACATCTGACTGAAGCCACCAGAGGCTGGAAGCAGATCTTCAACACATAGAAGACCTGAATCAGAGAGTTAGACGTTTATAAATGCAGTGAGAGCTAAAATCAGGGTTACTATGCTAATCTCAGGGCGAGAAAATGTGCAAATGTCAGGATCTTTATTTTAGTGTTGCAAAAAAAGagcttgtttctagtccaaatatcaaaacattctCATTTTTATACAAGCAgttaatattgtgttgttttctgaagtgatgagtcaaaatgaagtgagttttgcattaaaatgagctaaatagTCTTCCATTAGGGTAAGCAAAATAGTCTTATGTCAAAAAGAAAACTAGATTCTTttactcaccccattggcagattattttgcttgttttaaggaaaaactcacttaattttgactcattatttatgaaaacaacacaatatgttCTGCTTGTCTAGTAAATACTTCTTGATTGAAAGAGTTTTAGGTATTTGGACTGGAATCAAGCTTTATTTGCAGTGTTTATAATAACACAATCGCTTAAAGGCATTTAGGCTGGAAATTGATATGACTGAATAATTATATTGTCGagaatgcattatttattttcactatcGCTTTATTTTTGACtgtcattttgacacattttgctGACTACAAGTTATAGTGCCAGCTATTTCTTGTTGGAATATTAGCAGATAGTTTGCTTATTGTTTGCTGATATTTCTTATCTAACACACATCCTGCTTATTATAAGAaacattgcaagtacatgtcaatgtATAGTAATCCCAACgcttcaatgcaaaaaaaaaagactttgtttttgtctcgtttgaatctaaaaagtcttaaatcaagaagcattttctagatgagctaaaaatattgtgttgtttttagaaatattaagccaaaatgaagtaagttttgcagtaaaacaagcaaaataatctgccattaggttaaacaaaacaagcattttgaaataagactattttaaggaaaaacttgcttaattttgaCTCCTTATTTCTGCAAACATGACAATATTTTCtgcttgtctggaaaatgcttcttgatttaaagagTTTTACATATTTGGACCGGAATCAAGCCTTATTTTGCAGTGTTTATAATAACACAATCGCTTAAAGGCATTTAGGCTGGAAATTGATATGACTGAATAATTATATAGTCGAGAATGCATTAATTATTTTGCCTATCGCTTTATTTTTGACTgtcatttttaagcattttgctgACTACAAGTTATAGTGCCAGCTATTTCTTGTTGGAATATTAGCAGATAGTTTGCTTATTGTTTGCTGATATTTCTCCTCTAacacacatcttgcttattataagaaacattgcaagtacatgtcaatgtATAGTAATCCCAACgcttcaatgcaaaaaaagactttgtttttgtctcttttgaatctaaaaagtcttaaatcaagaagctttttctagacgAGCTAAAAATACTGTTGATTTCAGAAATAAGGAGCCAAAATGAAGTAAGTTTtgcatttaaacaagcaaaataatctgccattaggctaaacaaaataaacttatttctgaaaacatgacattattatttgcttgtctagtaaatgcttcttgatttaaagagttttagatatttgtacCAGAATCAAgctttattttgcagtgtttatAATAACACAATCTCTTAAAGCCGATTAGGCTGGTAATTGATATGACTGAATAATTATATACTCGagaatgcattatttattttgcctATAGCTTTATTTTTGATGCTCCTTTTACACATTTTGCTGACTACAAGTTATAATGCCAGCTATTTCTTGTTGGAATATTAGCAGATTGTTTGCTTAGTATCTGTTGATATTTCTCTATTAACATTCTCCTGATACAAAACATTTCAAGTACATGTAAATTAATACttaattcataaaaacatgataTATTGACTTAAAAAGCAGCAAGCGCTTACTAAAATCAGGGTTTCTGTGCTAATCTCAGGGCGAGACATGTACATGTGCAGATGTGAGGAGCTTTGAGTTACATTCTTCACTGTAAAACAGGCTTTGCTCATCTAAAGTCTAgcacaaatatctaaaaaactcttaaatcaagaagcattttctagatgagctaaaaatattgtgttgttttcagaaataatgaggaaaaatgaagtgagttttgcatcaaaacaagcaaaataatctgccattagGCTAAACAAAACAgtcttatttctgaaaacatgacaatattctttgcttgtctagtaaatgcttcttgatttaaagagttttagatatttggaccagaatcaagctttattttgcagtgtttatAATAACACAATCTCTTAAAGCCGATTAGGCTGGAAATTGATATGACTGAATAATTATATACTCGAGAATGCATTATCTATTTTGCCTATCGCTTTATTTTTCACTgtcatttttaagcattttgctgACTACAAGTTATAATGCCAGCTATTTCTTGTTGGAATATTAGCAGATAGTTTGCATAGTATTTGTTCAGCATCAAATATACAGAATCAATAAGAGCCCAATTGTTCAAATCTATCAGCAAAAAACTAAATTAGTTCACATTTTCTTCCTCTCGGAAtcaaatttttaattttgtgcatcaaaactcaaataaaaatataatgagaCAAGCAAAATAACATTATAGATGAGAACACATTGGGccataaataacaacaatattgaaatgtatataaatacaaatatgcacaGCATGTCAtaaaaattatagtatataagGAAGAAAgattgaaagaaaaaacatataaacatacacattttCTCTGTGATTTCCAATCATAACTACCATTAAGAGGTCAACCCAAGcagcactttcttttttttttttggaaatgtgtttttattaaagttttttttaaacatagtaTACAAATAACATTTACTTAGAATGTTTACAGTCACAAAAAAGGAAACAATTAGAAAGAAAAAGaatatataagatataaattattataatagatCAATTATAATGACAgctaaaagaaaaaattaaaactaaataaaataaaaaaataataataataaaaaaggaggaggggggggggtaaacaaataaataaataagcagcactttctaaaatattaataaacattagtcaagatgagtttttccttaaataatCTGCCCATGGGGTAAGccaattattttgcttgttttaaggaaaaacccatttcattttggcatattatttcttaaagcaagactatgttttgcttgtctaaaaaatgcttcttggtttaagaatttCTAGATGTTTTGGCTAGAAATAAGGCAAAAACAGTAAGAGAAGCTATTTTTGTAGTGTAaacgtacactctcagaaaaacgCGAGGtgttactggggtggtaccttttcaaaaggtgcaaatttgtacctaaaaggtctataataatacctcaagggtacataataaagtacaaaagtgttcctcttaatttATTAGGtactaataaatacttttatgttaccaatatggaccctttaagtacaaatgtgtacctttagaAAAgggaccaccccagtgacagctcgcgtacctttatttttgagagtctACTTATACTCTAATTAGAATAAGTTGCCATGCAAATGCAATGTAAAGTATAATcaacacaaatgtgttaaaataaatattatgattCCTTATACCTTATGATTTTGTTCCACAATGTGAAAAAGTGCAGTACGTTATCTAGTATATTGAAAACCACAGTGTTTTGCAGTCCAAATCAATCATGCAAGACACTGTAATCGTTCATATTCTTACAGAAACCTCAGGTAATGTCGTAATATTTCACTACTAATTGAAGAAGGCTGAACGAACAGAGTTATTCAGCAGTTTTGTTTGGTACAAGACATTTATGTAgctttatattcattattttttggtGTATTAAACAGACAGAGCAGGCCATGTGTATAGTTTATTACTCTATCACTCGCTTTTTGCAGTAGAAATTGAGCTTTTGTGATTGAAACGTTGACTGATGATCACTTTaggtgtgttttgtgtttgtgtcattgctgcattcatctaaAACTACGATTGTATGCAATCGACTTGTACattcagcattcatttaaaacTACAAGAGCCTAGCATGGAAAACTCTGTATTTATCATGCATTATTTATTGTTTCAGTGTGCAGTCGGCTGTAATGTTTGTGTTATTTAATCAAATGTTCGATGAATTGCatcacatttatttaattgttaaatgtGTAAATCATTGTTAAAGAAGGCCACAGACTGTGATATTGCGATCTCGATCGtttaaaaacaatagttttattcTCATTTATGACGCCAAAGGGTTTTATTTAAGGTCTGTGCTGATCAGAGTAATAATTTCTTGGTTTATGGGTTTGTTGTGATGACTTGATTCGCACTGCAGAGTTTGACGCACTCAATTGTTGTGTGAATATCAAAAATCTCCAGATGCAATGTTTGTGGATGGTGTTTATTTTACAGCTCTGTAATGCACTTCACCTGAAAACCAAAGTAGACGTGTCTCTCGTGTGTTTGCAAAGCATTTGCTTTACACTAAAGGCTGTGAATGACACCTTACTGTATATTGCTGGATTACTGAAGTGCCTCTGTACAACCTGACACTCTGAGCCccctttgtaaataaatatatgcttATTATGAAGActgagttttttatttgttttttcaacaaGAGTT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194671

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013433 lncRNA upstream 10543 50470860 ~ 50471274 (+) True XLOC_006282
TCONS_00013698 lncRNA upstream 27117 50451904 ~ 50454700 (+) True XLOC_006281
TCONS_00013697 lncRNA upstream 91407 50383914 ~ 50390410 (+) True XLOC_006280
TCONS_00013696 lncRNA upstream 95185 50383914 ~ 50386632 (+) False XLOC_006280
TCONS_00013695 lncRNA upstream 614409 49865172 ~ 49867408 (+) True XLOC_006276
TCONS_00013699 lncRNA downstream 3400 50520625 ~ 50521600 (+) False XLOC_006285
TCONS_00012286 lncRNA downstream 780328 51297553 ~ 51375708 (+) False XLOC_006291
TCONS_00012287 lncRNA downstream 794711 51311936 ~ 51375708 (+) True XLOC_006291
TCONS_00013436 lncRNA downstream 799999 51317224 ~ 51318734 (+) True XLOC_006292
TCONS_00013437 lncRNA downstream 811245 51328470 ~ 51332764 (+) True XLOC_006293
TCONS_00012278 mRNA upstream 103779 50375800 ~ 50378038 (+) True XLOC_006279
TCONS_00012277 mRNA upstream 108796 50368668 ~ 50373021 (+) True XLOC_006278
TCONS_00012276 mRNA upstream 309852 50151407 ~ 50171965 (+) True XLOC_006277
TCONS_00012275 mRNA upstream 712445 49727333 ~ 49769372 (+) False XLOC_006274
TCONS_00012282 mRNA downstream 260962 50778187 ~ 51021871 (+) True XLOC_006287
TCONS_00012293 mRNA downstream 1062626 51579851 ~ 51584264 (+) True XLOC_006297
TCONS_00012294 mRNA downstream 1193500 51710725 ~ 51731298 (+) True XLOC_006299
TCONS_00012296 mRNA downstream 1336491 51853716 ~ 51881759 (+) False XLOC_006301
TCONS_00012295 mRNA downstream 1336491 51853716 ~ 51881759 (+) False XLOC_006301
TCONS_00012271 other upstream 1499017 48982686 ~ 48982800 (+) True XLOC_006270
TCONS_00012270 other upstream 1578758 48902945 ~ 48903059 (+) True XLOC_006269
TCONS_00012262 other upstream 2435589 48046112 ~ 48046228 (+) True XLOC_006258
TCONS_00012261 other upstream 2577635 47904068 ~ 47904182 (+) True XLOC_006257
TCONS_00012254 other upstream 3345963 47120482 ~ 47135854 (+) True XLOC_006247
TCONS_00012280 other downstream 3443 50520668 ~ 50521600 (+) True XLOC_006285
TCONS_00012281 other downstream 85414 50602639 ~ 50602714 (+) True XLOC_006286
TCONS_00012283 other downstream 276531 50793756 ~ 50793872 (+) True XLOC_006288
TCONS_00012284 other downstream 483834 51001059 ~ 51001178 (+) True XLOC_006289
TCONS_00012285 other downstream 585519 51102744 ~ 51102859 (+) True XLOC_006290

Expression Profile

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