RNA id: CI01000001_00218182_00220017.mRNA



Basic Information


Item Value
RNA id CI01000001_00218182_00220017.mRNA
length 1686
RNA type mRNA
GC content 0.41
exon number 6
gene id CI01000001_00218182_00220017
representative True

Chromosome Information


Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 217657 ~ 220116 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGAAAGGATTTAACAGACGTTAGTTATGAATGATCCACTTGAACTTTTATTTTATCTTTTAATTCATCCTTCACAATCTTTGTTTTTTTTCCTGACAGGATGGCTCTTGCAAACAACCAATACAAAAGCCTCTGCACCGTCGGCCGTTTCCCACAGGTCCAACTGCAGGCAGACGACAGCTGGAAAGGTGCATGCTGCGCTCCGGTTTACACCAACCCCGATGTTAACCCTTGTGCTAAGAGTTGCATAAATCCGTGTGTAAACCCATGCGCTAATGTTCATGTAAACCCATGCATAAAAACTTGTGTTAACCCATGCGTCAACCCTTGCATTAACCCTTGCACTACTCCACACACTAATCCTTGCAGCGTTGTCACTCCATGCCATGATTATGAGACTAAGGAAGTTGTCATCAAAGAGTGCATGGATGATTGCACAAAAGCTCTCCTCCGGGTGACTAAAGTCGATCTTCTCAAGTGCAGGACTGGACCGAATCGTAAGGAGCATCACACACATTGTTTCCCTGATGATCACCTCATCGTCCGCAGGGGACAGTGTTTCTATATTTGGGTTGATCTGTGCCGTCCTTTCAATCCTAGTTGTGACAAACTTCACCTGGAGCTGAAACTAGGTCATGTCCCATCCATCCGGGACGGCACTTATGTGATCGTTCAAATTGTGGAAGAATTCAAGAAAGACTGCTGGGGGGCAAAGATTGTCGAAAAGTGTCAAAACCGAATCAAATTGTGTGTGCACTCACTTCCGACTGCTTGTGTTGGACGATACCAACTCAGTGTCGTGACTCACTGTCAAGGAGGAAGATTCACTCTACCATATGTTCCTGACAATGACATTTACATGCTGTTCAACCCCTGGTGTAAAGATGACTGTGTGTACCTGAGTGAAGAGGAGGAGAGAGTTGAGTATGTGCTGAATGACATGGGCAGAATCTACTATGGAACTAAACAGCAGATTGGCTGCAGAACATGGAACTTTGGTCAATTTGAGGAGGGAGTCTTGGCTGCATGCTTATATGTGCTGGAGAAGAGTTATGCCCTTTGCTCAGGATGGGGAAACCCAGTTAACATTTCCAGAGTGTTGTCTGACATGCTCACTCAGGTGCATGGATTCACCAACATTGTGGTCAAACAGCACTGTTAAACCAATCAAATAACCAAACGAGAAGAAATTTTCATTGGAAAAGAAAGTGTTGTTGACTAAATGCTTCAGTAAAACTTTCACATGATTTGCAGACTGAATTAACACTGTTTCACTTCATCTACTAAAGACAAATGTTACAGTTTGATTGTGGTCTTCAAACTTGTTCTCCAAATATTGTGATTTTCATCCTGTTGATTAATAATTTCCTATCTTTAAGCAATATATTGGGATAAGGGATTAGTAATTCCTTCTAATGCATATTATGATGATGTCTGAATTAATGAAATACATAAAAGAGCTGAGGTGTCCTTGTCTGCGTTTAAATCAAGTCTAATTATACCTGAGAGATTCAGATTTAGGCTACATCATATTAATCATTATCTAATCAATTACTATTTCCTGGGTTCTTCTTCTCATGCTAATTATGTTAATGAAAACCTTTGAAACACATGTGGTTTTATGATGTTTATGTACTCTTACTCGCTTTGTTAATCTTGTCTATGTGCAGTCTCCGCAATTAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU14311 lncRNA downstream 5411 211309 ~ 212246 (-) True G12873
TU14318 lncRNA downstream 8299 209149 ~ 209358 (-) True G12880
TU14316 lncRNA downstream 13951 203492 ~ 203706 (-) True G12878
TU14315 lncRNA downstream 14440 202998 ~ 203217 (-) True G12877
TU14305 lncRNA downstream 32600 184856 ~ 185057 (-) True G12868
TU14361 lncRNA upstream 57928 278044 ~ 278289 (-) True G12920
TU14362 lncRNA upstream 62439 282555 ~ 282782 (-) True G12921
TU14374 lncRNA upstream 115609 335725 ~ 336033 (-) True G12933
TU14335 lncRNA upstream 138755 358871 ~ 359739 (-) True G12896
TU14386 lncRNA upstream 185215 405331 ~ 406159 (-) True G12945
CI01000001_00192545_00195828.mRNA mRNA downstream 20826 191931 ~ 196831 (-) True CI01000001_00192545_00195828
CI01000001_00124107_00131285.mRNA mRNA downstream 86277 123059 ~ 131380 (-) False CI01000001_00124107_00131285
CI01000001_00113458_00118362.mRNA mRNA downstream 99210 111929 ~ 118447 (-) True CI01000001_00113458_00118362
CI01000001_00105105_00108304.mRNA mRNA downstream 107813 104255 ~ 109844 (-) True CI01000001_00105105_00108304
CI01000001_00001500_00064341.mRNA mRNA downstream 152081 708 ~ 65576 (-) True CI01000001_00001500_00064341
CI01000001_00222940_00227735.mRNA mRNA upstream 2684 222800 ~ 228007 (-) True CI01000001_00222940_00227735
CI01000001_00238241_00249437.mRNA mRNA upstream 18125 238241 ~ 249437 (-) False CI01000001_00238241_00249437
CI01000001_00305883_00333574.mRNA mRNA upstream 85375 305491 ~ 333798 (-) True CI01000001_00305883_00333574
CI01000001_00362143_00378213.mRNA mRNA upstream 141498 361614 ~ 378213 (-) False CI01000001_00362143_00378213
CI01000001_00445369_00466166.mRNA mRNA upstream 225124 445240 ~ 466897 (-) True CI01000001_00445369_00466166
TU14263 other downstream 82732 129502 ~ 134925 (-) True G12848
TU14286 other downstream 92200 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU14333 other upstream 25889 257372 ~ 257517 (-) True G12894
TU14337 other upstream 147126 367242 ~ 397133 (-) True G12898
TU15779 other upstream 1543553 1763669 ~ 1767458 (-) False G14104
TU15917 other upstream 1774094 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 1835858 2055974 ~ 2056478 (-) True G14228

Expression Profile