RNA id: TU14333


Basic Information

Item Value
RNA id TU14333
length 146
RNA type TUCP
GC content 0.47
exon number 1
gene id G12894
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 257372 ~ 257517 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTTAGGAAAGAAAAGTATCTTGAGAAAACATGGCGGAGTAAGAACGAAACTTTATCGATGCTTCTTGAAAAAGCGAGAAACTTTTCCACCACAGGACATGTAGCGCGATTACACACTTTAAAGTACAGATCTGAAAGTGTCTGAGGATGGAGGCCTCGTGTCTGGAACTAGCTCTGGAAGGTGAGCGTCTGTGTAAAGTGGGAGATTACCGTGCGGGCGTCTCCTTTTTTGAGTCGGCCATCCAGGTGGGCACAGAAGACCTGCAGATTTTGAGCGCCATCTACAGTCAGCTGGGAAACGCCTACTTCCACCTGCATGACTACAACAAGGCTCTAGAATATCATCGGCATGACCTGACGCTCACTAGAACTATCAGAGATCAGCTAGGAGAAGCTAAAGCCAGTGGGAACCTTGGAAACACGTTGAAAGTTTTGGGACGCTATGATGAAGCAGCAGTTTGTTGCCAAAGACATCTGGATATTTCCAGGATGCTCCATGATAAGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14311 lncRNA downstream 33759 211309 ~ 212246 (-) True G12873
TU14318 lncRNA downstream 36647 209149 ~ 209358 (-) True G12880
TU14316 lncRNA downstream 42299 203492 ~ 203706 (-) True G12878
TU14315 lncRNA downstream 42788 202998 ~ 203217 (-) True G12877
TU14305 lncRNA downstream 60948 184856 ~ 185057 (-) True G12868
TU14361 lncRNA upstream 20527 278044 ~ 278289 (-) True G12920
TU14362 lncRNA upstream 25038 282555 ~ 282782 (-) True G12921
TU14374 lncRNA upstream 78208 335725 ~ 336033 (-) True G12933
TU14335 lncRNA upstream 101354 358871 ~ 359739 (-) True G12896
TU14386 lncRNA upstream 147814 405331 ~ 406159 (-) True G12945
CI01000001_00222940_00227735.mRNA mRNA downstream 17998 222800 ~ 228007 (-) True CI01000001_00222940_00227735
CI01000001_00218182_00220017.mRNA mRNA downstream 25889 217657 ~ 220116 (-) True CI01000001_00218182_00220017
CI01000001_00192545_00195828.mRNA mRNA downstream 49174 191931 ~ 196831 (-) True CI01000001_00192545_00195828
CI01000001_00124107_00131285.mRNA mRNA downstream 114625 123059 ~ 131380 (-) False CI01000001_00124107_00131285
CI01000001_00113458_00118362.mRNA mRNA downstream 127558 111929 ~ 118447 (-) True CI01000001_00113458_00118362
CI01000001_00305883_00333574.mRNA mRNA upstream 47974 305491 ~ 333798 (-) True CI01000001_00305883_00333574
CI01000001_00362143_00378213.mRNA mRNA upstream 104097 361614 ~ 378213 (-) False CI01000001_00362143_00378213
CI01000001_00445369_00466166.mRNA mRNA upstream 187723 445240 ~ 466897 (-) True CI01000001_00445369_00466166
CI01000001_00493196_00498517.mRNA mRNA upstream 235248 492765 ~ 498517 (-) True CI01000001_00493196_00498517
CI01000001_00500347_00500698.mRNA mRNA upstream 242566 500083 ~ 500698 (-) True CI01000001_00500347_00500698
TU14263 other downstream 111080 129502 ~ 134925 (-) True G12848
TU14286 other downstream 120548 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU14337 other upstream 109725 367242 ~ 397133 (-) True G12898
TU15779 other upstream 1506152 1763669 ~ 1767458 (-) False G14104
TU15917 other upstream 1736693 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 1798457 2055974 ~ 2056478 (-) True G14228
TU15886 other upstream 2001872 2262344 ~ 2297212 (-) True G14188

Expression Profile