RNA id: TU14337


Basic Information

Item Value
RNA id TU14337
length 268
RNA type TUCP
GC content 0.40
exon number 3
gene id G12898
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 367242 ~ 397133 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGAAATGGCGGAGCGGGATGGAAGCGACGTCTGTCAGAGTTCCAGCCAAGGCTCTGACTACCTTCTCAGAGCAGATGAGAAGTCGTCATGGAGTCGACCGGACTCGTCTGCCTCTGGACAGTACACCTACACCGTTCCCAGCCCTACAGAGATACACATCGTTACCAGACCAGAGCCTCTCATGCAGAAGATCGATGAAAGGCAGAGACTCGCCCGTGAACGGAGGGAGGAGCTGGAGAAGCAGAATGCTGCACGGGGCTCCAAGTGGTTGGAGAGAGAGGAGAGAGCCCGACAGTTTCATGAGAGACAGCTGGAGGAGCGCAAGAAGAGGCTGGAGGAGCAGCGAGTGAAGGAGGAGAGGAGACGAGCTGCTGTGGAGGAGAAACGACGGCAGAAACTGGAGGAGGAGAAGGCGCGGTATGAGGCTGTTATCAGGAGGACCATGGAGAGGAGTCAGAGAGCCAGGCCGAAGTCGAACCGCTGGAGCTGGGGAGGAACGCTTTCTGCTAGCACCTCTCACAACAGCGATGCTGAAAGACGGTCAGTCTCCACTATGAATCTGTCCAAACACATGGATCCAGTCATTTCTAAACGCCTGTCATCTTCCTCAGCCACCTTGCTGAATTCACAAGATAGAGCCTTACAGAAGCAGACATCTCTCTCGTCATCTTGCTTGATTAAAAAAACGCTATCTAAATCCCAAATATCCAGAGAGAAGATCCCTCAGGACAAACCAGCAGGTACGCGTCGCTTGCCTCTTACCCCATGGGAGAATACAGTGGTCAGTCGACTACAGACACCAACACACTCCTACCTGGCCAGGAGTCGTAGCGCCATGTCTTTGTCTGGAGAAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14335 lncRNA downstream 7503 358871 ~ 359739 (-) True G12896
TU14374 lncRNA downstream 31209 335725 ~ 336033 (-) True G12933
TU14362 lncRNA downstream 84460 282555 ~ 282782 (-) True G12921
TU14361 lncRNA downstream 88953 278044 ~ 278289 (-) True G12920
TU14311 lncRNA downstream 154996 211309 ~ 212246 (-) True G12873
TU14386 lncRNA upstream 8198 405331 ~ 406159 (-) True G12945
TU14387 lncRNA upstream 16551 413684 ~ 413948 (-) True G12946
TU14396 lncRNA upstream 107716 504849 ~ 505048 (-) True G12955
TU14402 lncRNA upstream 156270 553403 ~ 553752 (-) True CI01000001_00538192_00559082
TU14404 lncRNA upstream 207968 605101 ~ 606584 (-) True G12963
CI01000001_00305883_00333574.mRNA mRNA downstream 33444 305491 ~ 333798 (-) True CI01000001_00305883_00333574
CI01000001_00238241_00249437.mRNA mRNA downstream 117805 238241 ~ 249437 (-) False CI01000001_00238241_00249437
CI01000001_00222940_00227735.mRNA mRNA downstream 139235 222800 ~ 228007 (-) True CI01000001_00222940_00227735
CI01000001_00218182_00220017.mRNA mRNA downstream 147126 217657 ~ 220116 (-) True CI01000001_00218182_00220017
CI01000001_00192545_00195828.mRNA mRNA downstream 170411 191931 ~ 196831 (-) True CI01000001_00192545_00195828
CI01000001_00445369_00466166.mRNA mRNA upstream 48107 445240 ~ 466897 (-) True CI01000001_00445369_00466166
CI01000001_00493196_00498517.mRNA mRNA upstream 95632 492765 ~ 498517 (-) True CI01000001_00493196_00498517
CI01000001_00500347_00500698.mRNA mRNA upstream 102950 500083 ~ 500698 (-) True CI01000001_00500347_00500698
CI01000001_00506140_00517386.mRNA mRNA upstream 108621 505754 ~ 517386 (-) True CI01000001_00506140_00517386
CI01000001_00538192_00559082.mRNA mRNA upstream 140460 537593 ~ 559082 (-) False CI01000001_00538192_00559082
TU14333 other downstream 109725 257372 ~ 257517 (-) True G12894
TU14263 other downstream 232317 129502 ~ 134925 (-) True G12848
TU14286 other downstream 241785 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU15779 other upstream 1366536 1763669 ~ 1767458 (-) False G14104
TU15917 other upstream 1597077 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 1658841 2055974 ~ 2056478 (-) True G14228
TU15886 other upstream 1862256 2262344 ~ 2297212 (-) True G14188
TU17347 other upstream 3995181 4392314 ~ 4399515 (-) True CI01000001_04395469_04399381

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043423 True 3074 mRNA 0.49 19 NC_007134.7 39854596 ~ 39941025 (+)