RNA id: CI01000001_01565290_01569360.mRNA


Basic Information

Item Value
RNA id CI01000001_01565290_01569360.mRNA
length 1674
RNA type mRNA
GC content 0.56
exon number 8
gene id CI01000001_01565290_01569360
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1565290 ~ 1569360 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTCAGTGAAACATGCTCTCAGTCGGGGGTTGGAGCTGGGGAGGTCAGTTTTCCAGCTGGGTCTCTTCAAACCAGCCGGCCGTGTGGCAGCGAAGTTCCGCGGTGAGCGGCTGCGTGTGTCCCGTCCGACCCGCACCGTCCAGCCGCAGACCTTCTTGCCTGGCCGGTACCGCTTCTTCCGCCTGTCTCTCAGCGGGCTGGCCGCCCAGCTCCAGTCCGGCGCTTTCAGGAGAGTGATTGGGGGTGGTTCACCCAGAAACAGGGCTGTTTTCCTGGCGTTTGGGGTGGGTTTAGGGCTGATTGAACAGCAGCAGGAGGAGGACAGGACAAGCGTTGCTCTGTGTCAGGAGATACAGTCCGTATTCAGAAAGAAAAAGTTCCAGAGCCCTCTGAAGCCCTTTACATCAGGCTACAAGTTGGAGGACTATGTCATTGGGAAACAGATCGGGAAAGGTTGTAATGCAGCCGTGTATGAGGCAGCGGCTCCGTTCGCGTTCCCTGCGGAGACTGAGAAGTGTTCACTGGTGGAACTGAACCAGAAAGAAACAGATGATGACAATAAGAAAGCAGGACCGCTTAGATTCCCTACTACACCCAGCTTTCCTTTAGCTATGAAAATGATGTGGAACATTGGGGCTGGTTCATCAAGTGATGCCATCCTTCGCTCTATGTCTATGGAGTTGGTTCCTGCCTGTCCACAGGCCTTAACGAAAGAGCAAGGAGAGATTGCTTTGAATGGGCACTTTGGAACAGTGCCTAAACGGCTGACCGCTCATCCCAACGTGATCACAGTGTACCGGGCCTTCACCGCGGAGGTCCCGCTGCTGCCTGGAGCTCAGGAGGAGTACCCCGATGTCCTGCCTGCCCGACTCAATCCATTGGGTTTGGGCAGTAATCGAACACTGTTCTTGGTCATGAAGAATTACCCATGCACCCTGCGGCAGTACCTGGAGGTGTGCGTGCCAAACCGGATGCAGGCCTCTCTCATGTTGCTGCAGCTGCTGGAAGGGGTGGACCACCTGTGCAGACAGGGCATCGCTCACAGAGACCTCAAATCAGACAATGTGCTCCTGGAATTTGACAGCAAGGATTTGGGCCTCAGACTGCCCTTCAACAGCTGGTGGGTCAACAGAGGGGGAAACTCCTGTCTGATGGCACCTGAGGTAGCCACAGCAGTCCCAGGTCCAGGGGTGACGATTGATTACAGTAAAGCAGATGCCTGGGCCATAGGGGCGATTGCCTATGAGCTCTTCGCTCAGCCAAACCCCTTCTACAGCTCACAGGGGCTGGAGAGCCGCAGTTACCAGGAAAGACAACTCCCTCCACTTCCTGCTGCTGTACCTGCTGAAGTACAGCTAGTAGTGAAGCTCCTGCTACGCAGAAACGCTCGCAAGCGCCCCAGTGCACGAGTGGCCGCTAACATACTTCACATCAGCATGTGGGGCAAGCGTGTCTTGGCCAGCTTGGATCAGGCAAGAATGGATAAAATGGTCGACTGGCTGCTGTGTCAGTCTGCTGTGGTGCTCCTGCAGGGTCGTGGGCCCGGCGGAAGCTCAGTGGAAGCTGAACTCCAGAGATCCTTCCTTGCCAACATAGACCTGGAGGACCTCCGAACCGCAGTCAGCTTCCTCGTGTATGGACAAGAGCAATGGCAGTCTCTGCTCATGCACTAG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K05688 PINK1; PTEN induced putative kinase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15213 lncRNA downstream 153639 1411444 ~ 1411651 (-) True G13619
TU15212 lncRNA downstream 154134 1410887 ~ 1411156 (-) True G13618
TU14940 lncRNA downstream 306397 1258524 ~ 1258893 (-) True G13415
TU14935 lncRNA downstream 311997 1252995 ~ 1253293 (-) True G13410
TU14934 lncRNA downstream 312942 1252125 ~ 1252348 (-) True G13409
TU15274 lncRNA upstream 78702 1648062 ~ 1648288 (-) True G13670
TU15275 lncRNA upstream 79832 1649192 ~ 1649430 (-) True G13671
TU15255 lncRNA upstream 90895 1660255 ~ 1660709 (-) True G13656
TU15278 lncRNA upstream 97064 1666424 ~ 1667059 (-) True G13674
TU15282 lncRNA upstream 106446 1675806 ~ 1676078 (-) True G13678
CI01000001_01555180_01558113.mRNA mRNA downstream 7177 1554301 ~ 1558113 (-) True CI01000001_01555180_01558113
CI01000001_01476453_01500640.mRNA mRNA downstream 64322 1475534 ~ 1500968 (-) True CI01000001_01476453_01500640
CI01000001_01421483_01453330.mRNA mRNA downstream 111960 1420930 ~ 1453330 (-) True CI01000001_01421483_01453330
CI01000001_01377825_01378304.mRNA mRNA downstream 186986 1376792 ~ 1378304 (-) True CI01000001_01377825_01378304
CI01000001_01368611_01369774.mRNA mRNA downstream 195491 1368405 ~ 1369799 (-) True CI01000001_01368611_01369774
CI01000001_01582644_01584095.mRNA mRNA upstream 13284 1582644 ~ 1584440 (-) True CI01000001_01582644_01584095
CI01000001_01637015_01638058.mRNA mRNA upstream 67335 1636695 ~ 1638058 (-) True CI01000001_01637015_01638058
CI01000001_01707363_01743870.mRNA mRNA upstream 137729 1707089 ~ 1743870 (-) True CI01000001_01707363_01743870
CI01000001_01757774_01758445.mRNA mRNA upstream 187829 1757189 ~ 1759443 (-) True CI01000001_01757774_01758445
CI01000001_01760676_01761671.mRNA mRNA upstream 190806 1760166 ~ 1761671 (-) True CI01000001_01760676_01761671
TU14337 other downstream 1168157 367242 ~ 397133 (-) True G12898
TU14333 other downstream 1307773 257372 ~ 257517 (-) True G12894
TU14263 other downstream 1430365 129502 ~ 134925 (-) True G12848
TU14286 other downstream 1439833 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU15779 other upstream 194309 1763669 ~ 1767458 (-) False G14104
TU15917 other upstream 424850 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 486614 2055974 ~ 2056478 (-) True G14228
TU15886 other upstream 690029 2262344 ~ 2297212 (-) True G14188
TU17347 other upstream 2822954 4392314 ~ 4399515 (-) True CI01000001_04395469_04399381

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043371 True 4010 mRNA 0.40 8 NC_007134.7 37466967 ~ 37480785 (+)