RNA id: CI01000001_01902970_01917410.mRNA


Basic Information

Item Value
RNA id CI01000001_01902970_01917410.mRNA
length 1611
RNA type mRNA
GC content 0.54
exon number 4
gene id CI01000001_01902970_01917410
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1902429 ~ 1917454 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGACAATTTCGTTTCAGCCATACAACACACACATGTAGTCAAACATGTTCAAGAACCGGATCCGCATGTTTTTTAACGAACTGAAGGTGCTGGTTTTCATGCGATCCGGTTCTAGACGGTCCGACAGTGACGCAGAGCCGAACAGACGGTCCGACAGAATGAGGGGGCTCGGGATGGGCGGCTGCGGATGGCCGCCCTTCGTTGACTGCTCCAGCCGCGATGATGAGGAAGAATACTACGGGAGCGACCCCAGGCCCAGGAGCCTGGCGTTTGAGGAGAAAGACCCGAAACTGCAGGCGGGCCTGGACGCGGTCAGCCTCTCCAGCAGCACGGCCAGCGGCATGAGAACACCCCAGTGTCGAATCTGCTTCCAAGGGCCTGAACAGGGGGAGCTGTTGAGCCCATGCCGCTGCGACGGCTCCGTGCGCTGCACCCACCAGCCCTGCCTGATCCGCTGGATCAGTGAGCGAGGCTCCTGGAGCTGTGAGCTCTGCTACTTCAAGTACCAAGTCCTGGCCATCAGCACCAAGAACCCACTGCAGTGGCAGGCGATTTCTCTGACAGTGATTGAGAAGGTGCAGATCGCCGCCATTATCCTGGGCTCGCTCTTCCTCATTGCCAGTATCTCGTGGCTGGTGTGGTCTTCTCTCAGCCCGTCCGCCAAGTGGCAGCGCCAGGACCTGCTCTTCCAGATCTGCTATGGCATGTACGGCTTCATGGACATCGTGTGCATAGGCCTTATAATCCACGAGGGCTCATCCGTGTATAGAATCTTCAAGCGATGGCAGGCTGTAAACCAGCAGTGGAAAGTATTGAACTATGAGAAGTCGAAGGACTTGGGAGACCCAGTGAGCTCCAGCAGTAAGGCAGGTGGCCGCGGCTCGCGCAGCAACCCGCACGGCCTGGCCAGCGGCAGCAGGGGGGGCCAGCGAGTGCGCAGGTTAAGGACTATCCTCAACCACCACTGCGGCTACACCATCCTCCACATCCTCAGCCAGCTGCGGCCCAGCGACCCGCGGCTCGGGACCGCCACAAACCGCGAGGTGGTCATGCGGGTCACGACCGTATGAGGTCGGACTGGAGAGGGGAAAAAAGTTGCCACCACGTTTCAGGCTCCAATCGCCTTTGCCTGCGAAAGACAGTCTCGCGATGCCAGGATGATTGCGATTTTTCCTTGCATAACGTCTCACTTCGACTTTTTAAACGGACAGGAATGCACACGGGAGCGCGACGAACAATGCATAAGACATTGGGCGCCATTCATTCCTGGAGTTTCTATTGGCGAGACGCTCATGACTCTCTAGCACACTATTGCATTTTTAGTTTGATTTCCTCGCTGGTGTTGTTTTTTTATCGATGCGGTTTTTAAAACTTTTTGATTTTCTAAGGGAAAATGGTACATGAAGTGACACCGACGTGTGATGTATATGGTGACTCATATGGACCTATTGTAAATGATGTTTACGGATGCTTCTGACGCAGCAAGAAAGCCAACCATAACCAAACGATCACGACACAATAACCAGGGAAACAAGATACGAATTGTTACATACTAAAATATATCAAAGGGGAGGGTGCAATAAGACATCATAAGATTATACAGAGAATAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10659 MARCH4_9_11; E3 ubiquitin-protein ligase MARCH4/9/11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15955 lncRNA downstream 6339 1893706 ~ 1896090 (-) True G14257
TU15791 lncRNA downstream 30863 1867635 ~ 1871566 (-) True G14112
TU15782 lncRNA downstream 130961 1767956 ~ 1771468 (-) True G14104
TU15775 lncRNA downstream 147438 1754447 ~ 1754991 (-) True G14100
TU15769 lncRNA downstream 149198 1749106 ~ 1753231 (-) False G14096
TU15957 lncRNA upstream 3141 1920595 ~ 1920846 (-) True G14259
TU15959 lncRNA upstream 4445 1921899 ~ 1922240 (-) True G14261
TU15965 lncRNA upstream 57741 1975195 ~ 1975867 (-) True G14267
TU15915 lncRNA upstream 86707 2004161 ~ 2005063 (-) True G14217
TU15911 lncRNA upstream 87841 2005295 ~ 2007049 (-) True G14213
CI01000001_01873684_01874535.mRNA mRNA downstream 27894 1873640 ~ 1874535 (-) True CI01000001_01873684_01874535
CI01000001_01772744_01773670.mRNA mRNA downstream 128759 1772331 ~ 1773670 (-) True CI01000001_01772744_01773670
CI01000001_01760676_01761671.mRNA mRNA downstream 140758 1760166 ~ 1761671 (-) True CI01000001_01760676_01761671
CI01000001_01757774_01758445.mRNA mRNA downstream 142986 1757189 ~ 1759443 (-) True CI01000001_01757774_01758445
CI01000001_01707363_01743870.mRNA mRNA downstream 158559 1707089 ~ 1743870 (-) True CI01000001_01707363_01743870
CI01000001_01932927_01933914.mRNA mRNA upstream 15167 1932621 ~ 1933914 (-) True CI01000001_01932927_01933914
CI01000001_01976950_01992032.mRNA mRNA upstream 59262 1976716 ~ 1993561 (-) True CI01000001_01976950_01992032
CI01000001_01999489_02002753.mRNA mRNA upstream 80674 1998128 ~ 2002928 (-) True CI01000001_01999489_02002753
CI01000001_02057429_02071506.mRNA mRNA upstream 139360 2056814 ~ 2071506 (-) True CI01000001_02057429_02071506
CI01000001_02126257_02127537.mRNA mRNA upstream 207611 2125065 ~ 2127567 (-) True CI01000001_02126257_02127537
TU15779 other downstream 134971 1763669 ~ 1767458 (-) False G14104
TU14337 other downstream 1505296 367242 ~ 397133 (-) True G12898
TU14333 other downstream 1644912 257372 ~ 257517 (-) True G12894
TU14263 other downstream 1767504 129502 ~ 134925 (-) True G12848
TU14286 other downstream 1776972 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU15917 other upstream 76756 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 138520 2055974 ~ 2056478 (-) True G14228
TU15886 other upstream 341935 2262344 ~ 2297212 (-) True G14188
TU17347 other upstream 2474860 4392314 ~ 4399515 (-) True CI01000001_04395469_04399381
TU17350 other upstream 2558830 4476800 ~ 4478145 (-) True G15528

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043357 True 1372 mRNA 0.54 4 NC_007134.7 36771593 ~ 36798620 (+)
bowfin (Amia calva) TU64845 True 966 TUCP 0.59 4 CM030126.1 12980804 ~ 12992492 (+)