RNA id: CI01000001_02286306_02287855.mRNA


Basic Information

Item Value
RNA id CI01000001_02286306_02287855.mRNA
length 892
RNA type mRNA
GC content 0.46
exon number 2
gene id CI01000001_02286306_02287855
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2286263 ~ 2288002 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACGTCCTCTAGAAATACAAATAAAGTCCAATAAACAAATAAAACTTCTAAACAACTTATGTATACTTTATTAGCTGATTCAGTCTCTGCTGCGACCGGGTGCTTTTTGTGACTCTCTCCAAGGTTACTGTATTGTTTTGGAAACAGAATGAGCTCATACGTTGGAAATTCTTTTTCTAAGCAAACGCAAGACGCCTCCTCTTGTAGAATGCACACTTTTGGCAACTATGGAGCTCACTCTGAGTTCCACGAGTCCAATTACGCGTACGAAGGACTTGATCTCGGCGGATCCTTCAGTTCTCAAATCCCCTCCAACTCTTTGAAACGGGAGGCGATAAACACAACCGACCGTGCAAGGACCAGTGCAGCAGTTCAGCGAACACAGTCCTGTTCAGCTTTGGGCTCTCGTAGCTTTGTAAGCACTCACGGGTACAACCCCCTCAGTCACGGACTGTTGAGCCAAAAAGCCGAGGGGAATATGGAAGTTCTGGAGAAGCCCAGCGGCAAGAGCCGCACAGACGATATCAAAATGGAGACTACTTCAGCGATAAAGCAACAAACTAATTCGACTCAGCGTCAGAACCAGTCGCAGCCGCAGATATATCCGTGGATGACAAAGCTACACATGAGCCACGAATCTGACGGTAAAAGGTCACGAACCAGTTACACCCGGTACCAGACTCTGGAGTTGGAGAAAGAGTTCCATTTCAACCGATACCTCACACGTCGCAGACGTATCGAGATTGCCAATAACCTCTGCTTGAACGAGCGGCAAATTAAAATTTGGTTCCAGAACCGTCGCATGAAGTGGAAGAAGGACTCAAAGTTGAAAGTGAAAGGAGGACTATAAATAATGTGGTGCACGGCTTCAAATGAAACAACCTGAAAATAAA

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09305 HOX_5; homeobox protein HoxA/B/C5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16010 lncRNA downstream 131380 2154382 ~ 2154883 (-) True G14304
TU16007 lncRNA downstream 134807 2151126 ~ 2151456 (-) True G14301
TU16006 lncRNA downstream 137326 2148714 ~ 2148937 (-) True G14300
TU16003 lncRNA downstream 142898 2143141 ~ 2143365 (-) True G14297
TU15999 lncRNA downstream 167697 2118355 ~ 2118566 (-) True G14293
TU16042 lncRNA upstream 79856 2367858 ~ 2368107 (-) True G14335
TU15892 lncRNA upstream 110153 2398155 ~ 2398918 (-) True G14194
TU16053 lncRNA upstream 115175 2403177 ~ 2403748 (-) True G14344
TU15912 lncRNA upstream 182193 2470195 ~ 2473589 (-) True G14214
TU16167 lncRNA upstream 336305 2624307 ~ 2624520 (-) True G14445
CI01000001_02274875_02276207.mRNA mRNA downstream 9494 2274292 ~ 2276769 (-) True CI01000001_02274875_02276207
CI01000001_02258523_02262621.mRNA mRNA downstream 23160 2258442 ~ 2263103 (-) False CI01000001_02258523_02262621
CI01000001_02236985_02242725.mRNA mRNA downstream 42270 2236582 ~ 2243993 (-) True CI01000001_02236985_02242725
CI01000001_02173311_02179118.mRNA mRNA downstream 105276 2172770 ~ 2180987 (-) True CI01000001_02173311_02179118
CI01000001_02159372_02162554.mRNA mRNA downstream 123709 2159159 ~ 2162554 (-) True CI01000001_02159372_02162554
CI01000001_02289890_02291109.mRNA mRNA upstream 1088 2289090 ~ 2291744 (-) True CI01000001_02289890_02291109
CI01000001_02301569_02304543.mRNA mRNA upstream 13133 2301135 ~ 2304572 (-) True CI01000001_02301569_02304543
CI01000001_02305032_02310500.mRNA mRNA upstream 17000 2305002 ~ 2311082 (-) True CI01000001_02305032_02310500
CI01000001_02318724_02321379.mRNA mRNA upstream 30722 2318724 ~ 2321379 (-) True CI01000001_02318724_02321379
CI01000001_02327669_02329891.mRNA mRNA upstream 39667 2327669 ~ 2329891 (-) True CI01000001_02327669_02329891
TU15926 other downstream 229785 2055974 ~ 2056478 (-) True G14228
TU15917 other downstream 291365 1994210 ~ 1994898 (-) True G14219
TU15779 other downstream 518805 1763669 ~ 1767458 (-) False G14104
TU14337 other downstream 1889130 367242 ~ 397133 (-) True G12898
TU14333 other downstream 2028746 257372 ~ 257517 (-) True G12894
TU17347 other upstream 2104312 4392314 ~ 4399515 (-) True CI01000001_04395469_04399381
TU17350 other upstream 2188282 4476800 ~ 4478145 (-) True G15528
TU17475 other upstream 2281080 4569082 ~ 4618357 (-) True G15639
TU17472 other upstream 2281475 4569477 ~ 4618357 (-) False G15639
TU17476 other upstream 2326173 4614175 ~ 4618357 (-) True G15639

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043337 True 956 mRNA 0.44 2 NC_007134.7 36118738 ~ 36120511 (+)