RNA id: CI01000001_02327669_02329891.mRNA


Basic Information

Item Value
RNA id CI01000001_02327669_02329891.mRNA
length 984
RNA type mRNA
GC content 0.49
exon number 2
gene id CI01000001_02327669_02329891
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2327669 ~ 2329891 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTTTAACTCTGTTAATCTGGGCAACTTCTGCTCCCAGACGCGTAAAGACCGGACATCCGAGTTTGGGGACAGGACGGGCTGTGCCTCCAACATCTACCTCCCCAGCTGCACCTACTACGTTCCAGAATTTTCCGCCGTCTCTTCGTTCCTTCCACAGGGGCCCTCGCGACAAATCACATACCCCTATTCCACAAATCTATCTCAAGTGCAACCAGTGCGAGATGTTTCCTATGGTCTGGACCCGTCCAGCAAATGGCACCACAGAACCAACTATGCATCTTGCTACTCAGGAGAAGACCTGGTGCACAGAGACTGTCTTCCGCCATCCACCATGACAGAAATGCTCATGAAAAACGAGAGTGTGTACAGCCACCACCACCACCACCAGCATCATCCGAACTCTAGCCACCCTTCTACCGGTTTCTACGCCGGCGTGGGGAAAAACAACGTGCTCCCTCAAGGTTTTGACCGCTTTTTTGAAACCGCTTATTGTAGCACGGACAATCAGTCAGAACATTGTTTACAAAAGAGCGAGATGAACAAATTAGAGACTTCTTCCCAACAACCCACAGCTGTTTCCGCAGCGCAGGAGCCGGAAAAGGACCCAGAGGATGAGGAGGAACATACCAATTCGGGCTCGTGCACTTCAGCAGCTACTAAGGACGGGAACGCAAGCAAGAGCAGCCATTCGAGTAGGTACCGAAGCTGTAAATGGGGAAAGGTTAAGGGACTAGCCCGGTGTTTTGTCGGTACCCCGCGCACAAGAAAGAAGAGATGTCCATACTCCAAGTTTCAGATTCGTGAACTGGAGCGAGAATTTTTCTTTAACGTTTACATCAACAAGGAGAAAAGGTTGCAGCTGTCCAGAATGTTAAACCTTACTGACAGACAAGTCAAAATATGGTTTCAAAATCGTAGAATGAAAGAAAAGAAATTAAGCAGAGATCGGCTGCAGTATTTCTCTGGGAATCCGTTGCTGTAA

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09296 HOX_11; homeobox protein HoxC/D11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16010 lncRNA downstream 172786 2154382 ~ 2154883 (-) True G14304
TU16007 lncRNA downstream 176213 2151126 ~ 2151456 (-) True G14301
TU16006 lncRNA downstream 178732 2148714 ~ 2148937 (-) True G14300
TU16003 lncRNA downstream 184304 2143141 ~ 2143365 (-) True G14297
TU15999 lncRNA downstream 209103 2118355 ~ 2118566 (-) True G14293
TU16042 lncRNA upstream 37967 2367858 ~ 2368107 (-) True G14335
TU15892 lncRNA upstream 68264 2398155 ~ 2398918 (-) True G14194
TU16053 lncRNA upstream 73286 2403177 ~ 2403748 (-) True G14344
TU15912 lncRNA upstream 140304 2470195 ~ 2473589 (-) True G14214
TU16167 lncRNA upstream 294416 2624307 ~ 2624520 (-) True G14445
CI01000001_02318724_02321379.mRNA mRNA downstream 6290 2318724 ~ 2321379 (-) True CI01000001_02318724_02321379
CI01000001_02305032_02310500.mRNA mRNA downstream 16587 2305002 ~ 2311082 (-) True CI01000001_02305032_02310500
CI01000001_02301569_02304543.mRNA mRNA downstream 23097 2301135 ~ 2304572 (-) True CI01000001_02301569_02304543
CI01000001_02289890_02291109.mRNA mRNA downstream 35925 2289090 ~ 2291744 (-) True CI01000001_02289890_02291109
CI01000001_02286306_02287855.mRNA mRNA downstream 39667 2286263 ~ 2288002 (-) True CI01000001_02286306_02287855
CI01000001_02339253_02340813.mRNA mRNA upstream 9362 2339253 ~ 2340813 (-) True CI01000001_02339253_02340813
CI01000001_02343039_02351117.mRNA mRNA upstream 12351 2342242 ~ 2351117 (-) True CI01000001_02343039_02351117
CI01000001_02416674_02429967.mRNA mRNA upstream 85959 2415850 ~ 2430607 (-) True CI01000001_02416674_02429967
CI01000001_02510977_02523145.mRNA mRNA upstream 180943 2510834 ~ 2523145 (-) True CI01000001_02510977_02523145
CI01000001_02547325_02557711.mRNA mRNA upstream 217304 2547195 ~ 2557725 (-) True CI01000001_02547325_02557711
TU15886 other downstream 30457 2262344 ~ 2297212 (-) True G14188
TU15926 other downstream 271191 2055974 ~ 2056478 (-) True G14228
TU15917 other downstream 332771 1994210 ~ 1994898 (-) True G14219
TU15779 other downstream 560211 1763669 ~ 1767458 (-) False G14104
TU14337 other downstream 1930536 367242 ~ 397133 (-) True G12898
TU17347 other upstream 2062423 4392314 ~ 4399515 (-) True CI01000001_04395469_04399381
TU17350 other upstream 2146393 4476800 ~ 4478145 (-) True G15528
TU17475 other upstream 2239191 4569082 ~ 4618357 (-) True G15639
TU17472 other upstream 2239586 4569477 ~ 4618357 (-) False G15639
TU17476 other upstream 2284284 4614175 ~ 4618357 (-) True G15639

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043326 False 1955 mRNA 0.40 2 NC_007134.7 36074798 ~ 36078132 (+)