RNA id: CI01000001_03277026_03283028.mRNA


Basic Information

Item Value
RNA id CI01000001_03277026_03283028.mRNA
length 3112
RNA type mRNA
GC content 0.44
exon number 3
gene id CI01000001_03277026_03283028
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 3275743 ~ 3283450 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTGTGGAGTTTGTGGAGTGCACTGCTGTCTGCAAGCTTGACACACTCATTAAATGTTGTATAGGATTCCACCCAGGGCCCCACTGTAAGATATTTATGTTTATGTATTATGGGTTCTTTTCCTCTTGGGCAGGCAGAACTTTTAAACTCTAGTCAAATCAATAGACAATGTTCTATTCTGTTTTTCTCCAGCACTCATGATGTGTTTTTCTACCCTTGCAGGGCTAGCGGCCATGGCGCTGCAGATGATGGTGTAGACGACAGCTCCGTGCCGAGAGAGAGAGAGCAGAGAGGACACTGGGTCAATAAGTTGCTCTCCTCACCGTAGACTGACAGACGCTGTCCAGGTTTTTTCCGGGCCCAGGATCAGAAAGGTGAACGGATCACCTGCCCTACCGCTTCCTCTCAGAAAGATATTAAAAATGCTGCCGTATGGGAGGAGGCCCCTTCCCGCCTCTGTTTGTGAGGCTTTCCTCCTCCTTTTCTTCCTCTCGTTCCTCCCTCAACATGGGGGGCTCGAGGTTAACCTCTCTTCCTTCCGAACCTTCACCCCACCAGAGGGAGGGCTTACGCATTTGGTCGTCCATAACAAAACGGGTGAAGTCTACGTCGGTGCTGTCAATTGGATCTACAAGCTCTCCAGCAACCTGACCAAGCTCCGAAGCCATGTTACCGGCCCTGTGGTGGATAATGAGAAATGTTACCCACCACCTGGGGTTCAGTCTTGCCCTCACGAGCTATCACAGACTAACAATGTCAACAAGCTGTTGCTTCTGGATTCAGGGCAGAACAGGCTCATTGCATGTGGAAGCACCTCGCAGGGTATATGTCAGTTCCTCAGACTGGATGACCTCTTCAAACTGGGTGAGCCGCATCACCGCAAGGAGCACTACCTTTCCAGTGTGTCCGAGGCTGGCACTATGTCAGGAGTGGTTATTAGTGGAACCCAAGGTGAAGACAGTGGTAAATTGTTTGTAGGTACACCCATCGAAGGAAAATCAGAGTACTTCCCGACTCTCTCCAGTCGTAAGCTGATGGCTAATGAGGAGAATGCTGATATGTTCAGCTTTGTCTACCAGGATGAGTTTGTCTCCTCACAGCTCAAGATTCCATCCGACACCCTTTCCAAGTTCCCTACCTTTGATATCTATTACGTCTATGGCTTCAGCAGTGAGCAGTTCATCTACTACCTAACTCTCCAACTGGACACCCAACTCACCTCGCCGGATGCCAGCGGTGAACAATTCTTCACCTCCAAGATTGTCCGCCTCTGTGTGGAAGACCCCAAGTTCTACTCCTACGTGGAGTTTCCTATTGGCTGTACCAAGGATGGTGTGGAATACCGATTGGTTCAAGACGCCTACCTCAGTCGGCCTGGTGCCAGGCTGGCACGATCGTTGGGTATTTCTGAACAGGAAGAGGTGCTGTTTATTGTTTTTGCTCAGGGCCAAAAGAACCGGGCAAAGCCACCGAAAGAATCTGCTCTGTGCCTGTTCACACTGCGTAAAATCAAGGAAAAGATTAAGGAGAGGATCCAATCCTGCTACCGGGGTGAAGGTAAACTGTCCCTGCCCTGGCTCCTCAACAAGGAACTGAACTGCATCAACTCAGATGTAGAGATTATTCTGCTGGATTGCATCTTTTCGTCTATCTCCATGCGACTTGCGTGGCAGACTCTCCCCTCTATATTTCGATTTTATGGTGGCTGTAACAACCGAGGAACTTTTAAAAGTTCCAGGGTATTGATCAGAGATGACTGGATATTGAAAAATCATATAGATGAAACTATATCCACCTCAGTAACCTCGGGGCTAATCGTTTTTCCATAGTTTTATTTATTGTGCTTTGGAACATAGGTTTGAGATTTAAGGGAATCCTTTGTCAATTTTTCTTTCTTAAAGGGGAAACAATGAAGGAAAATGTATGTAAATATCTATTCATTCCGACTGGGTGCACCAATATCATTTTCAGAGACCAAGAATGAGTACTGATACTTTCTATTTGGTATTAGCTAGGGCTGCCCCTTAGTAGTCGACTAACAGTTAGTCAACGAGAAGAGGCTTAGTCGACCAAAATTGGCATTAGTCGGTTAGTCGCTGGAAAAAAAAAAAAACATCCACAGGAAGTGCCGAAATCACGTAGTCTGTGACGGACAGATCGTTAACGGCAGGAAATCCAAACATTCGCCTATCATTCATCAACCTCAAACATGGCTTATCACTTGAAACTTGCAACTTTACAAGTTTGCTCGCTCTAACGTTAACCTAGAAATGTGCGCTATTATTTGGCACATATCCAAGTGTTTGTGTGGAGTTTGTGTGAGCTTACTGCATGACATGGAGGTGCCGCTGCGATCACTTGAAAGGGTTAGTTCACCCAAAAATTAAAATTCTGTCATTAATTACACACCCTCATGTCATTCCATACCCCTAAGACTTTCGTTCATTTTCGGAAATTAAGATATTTTTGATGAAATCCGATGGCTTAGCAAGAAAATTAACACTTTCAATACCCAGAAAGCTACTACAGACATATTTAAAACAGTTCATGCGAGTACGGTGGTTCAATGCAGGCCTCACTGAGCCATCGGATTTCATCAAAAATATCTTAATTTGGTCATACAGATAAGAATAATCTAACATTCGTATTGCTCAACATTGCGCTGCTGCAAGCTTTATGCGTCCGTTTGAGTGCTAAATTAGGCTATGTATTATAAAAAGGAGATTAAAGGCTCATTATTATGAGTTATATGGTTTATTAAATGTGCGATTAGCTGACTAATTGCTTAAATGAACGACTGCTAATCGACTAGAAAAATCTTTAGTCGAGGGCAGTCCTAGTATTTGCTAATACGTTACCTAGGCCTAAGGTTTTACCTTTTTAAAACCTTTTTTTTAATATATATACAGTAGTGTGGATAACCAAGCAGAAAGATGTGGAACCGAGACTGGGTTATACAAGAACATGATCTCTGTATCCGATAGTAGTATCGTATCACTGCATCCCTGTGTGGATTTTAGCATTGTGAATGCATAATTTGCATTTCCTGCTTCTTTGTAACCTTAACATAAGCTATTCAGATCAAACGAGGCCTTATGAGTGGCCAAATAAA

Function

GO: NA

KEGG:

id description
K06820 PLXNA; plexin A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16723 lncRNA downstream 54667 3220896 ~ 3221076 (-) True G14956
TU16214 lncRNA downstream 387295 2887824 ~ 2888448 (-) True G14492
TU16105 lncRNA downstream 435954 2758067 ~ 2839789 (-) True G14383
TU16180 lncRNA downstream 613031 2662288 ~ 2662712 (-) True G14458
TU16167 lncRNA downstream 651223 2624307 ~ 2624520 (-) True G14445
TU16775 lncRNA upstream 32371 3315821 ~ 3316045 (-) True G15007
TU16809 lncRNA upstream 42576 3326026 ~ 3326361 (-) True G15037
TU16822 lncRNA upstream 59943 3343393 ~ 3343791 (-) True G15050
TU16824 lncRNA upstream 61521 3344971 ~ 3345395 (-) True G15052
TU16836 lncRNA upstream 81584 3365034 ~ 3365233 (-) True G15064
CI01000001_03256512_03264159.mRNA mRNA downstream 11138 3256512 ~ 3264605 (-) True CI01000001_03256512_03264159
CI01000001_03248474_03248737.mRNA mRNA downstream 26919 3247731 ~ 3248824 (-) True CI01000001_03248474_03248737
CI01000001_03213566_03220085.mRNA mRNA downstream 55538 3213274 ~ 3220205 (-) False CI01000001_03213566_03220085
CI01000001_03165168_03197970.mRNA mRNA downstream 77482 3164964 ~ 3198261 (-) True CI01000001_03165168_03197970
CI01000001_03092786_03156426.mRNA mRNA downstream 118323 3091548 ~ 3157420 (-) True CI01000001_03092786_03156426
CI01000001_03402460_03453617.mRNA mRNA upstream 119010 3402460 ~ 3453617 (-) True CI01000001_03402460_03453617
CI01000001_03455306_03461493.mRNA mRNA upstream 171157 3454607 ~ 3461902 (-) True CI01000001_03455306_03461493
CI01000001_03465138_03473769.mRNA mRNA upstream 181283 3464733 ~ 3473769 (-) True CI01000001_03465138_03473769
CI01000001_03474495_03481164.mRNA mRNA upstream 191045 3474495 ~ 3481433 (-) True CI01000001_03474495_03481164
CI01000001_03489900_03496853.mRNA mRNA upstream 205436 3488886 ~ 3496853 (-) True CI01000001_03489900_03496853
TU15886 other downstream 978531 2262344 ~ 2297212 (-) True G14188
TU15926 other downstream 1219265 2055974 ~ 2056478 (-) True G14228
TU15917 other downstream 1280845 1994210 ~ 1994898 (-) True G14219
TU15779 other downstream 1508285 1763669 ~ 1767458 (-) False G14104
TU14337 other downstream 2878610 367242 ~ 397133 (-) True G12898
TU17347 other upstream 1108864 4392314 ~ 4399515 (-) True CI01000001_04395469_04399381
TU17350 other upstream 1192834 4476800 ~ 4478145 (-) True G15528
TU17475 other upstream 1285632 4569082 ~ 4618357 (-) True G15639
TU17472 other upstream 1286027 4569477 ~ 4618357 (-) False G15639
TU17476 other upstream 1330725 4614175 ~ 4618357 (-) True G15639

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043298 True 6135 mRNA 0.52 32 NC_007134.7 34321237 ~ 34753811 (+)
bowfin (Amia calva) AMCG00016956 True 1221 mRNA 0.53 1 CM030122.1 37687015 ~ 37688235 (-)