RNA id: CI01000001_03489900_03496853.mRNA


Basic Information

Item Value
RNA id CI01000001_03489900_03496853.mRNA
length 1893
RNA type mRNA
GC content 0.42
exon number 8
gene id CI01000001_03489900_03496853
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 3488886 ~ 3496853 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCTGATGTATGTTCGCGCACTGAGGCTATGAGGAGAGTAGTGATGTCGGAGGAGGTTGGGAAGAAATTGCAGGCGGTGGTGGACCGGGTGAATCAAGCGGTTTCCCGTCGCCCGAAGACGTTACCATGTATAGCCCCTCGGCTAGTTGCAGTTAGTAAGACTAAACCTCCGGAGATGGTGGTGGAGGCTTACAAACATGGACAACGAAACTTTGGAGAGAATTATGTAAATGAACTTGTTGAGAAAGCTTCCCATCCCCAGGTTGTGTTGTCATGTCCTGAAATAAAATGGCATTTCATCGGTCATCTGCAAAAGAATAACGTCAACAAACTCCTGGGTGTCCCAAACCTGTATATGGTAGAGACGATCGACTCTGTGAAACTGGCTGAAAAAGTCAACAGCTCGTGGCAAAAAATGAGAGCTGCCAACACGCAGAGGTTAAAGATTATGGTTCAGATCAACACCAGTGGAGAGGAAAGTAAACATGGCCTGCCACCTGATGAGATTGTAAACATGGTAAAACATGTCGTATCTCAGTGTTCTGCTCTTGACTTCGCCGGGCTCATGACGATCGGCCGTTACGGTTATGACCTTAGTGAAGGCCCCAACCCCGACTTCCAGATGCTGTTGAAACATCGTGATGAAGTTTGTGAGAGTCTGAAGATCCCAGCAGAGCAGATTGAACTCAGTATGGGCATGTCTAATGACTTTGAACATGCGATCGAGGTTGGCTCCACCAACATACGTGTCGGCAGCACTATTTTCGGCACCAGAGAATACCCCAACACCCCGAGCCCCAGTCCAGAGAAAAAGCCAATGGTCGTATGTGAGGAAGCAGCCAGGAAAATGGACCGGCTTACCGTCACAGAGAAATGAATGATGAGGGGGAAAAAAAGGTTACTGAACTAAATGTGGGACCTCTTGGGCTTTTTCCCAATGACTGGGCTCACCATTCACCAGTCAAGGGCCTTTAATGTCTTAACTAATGCTGCTGACCTGGTCTTCTGTGGCGAAAGAAGTGTAATTTGGAACTGGAATACTAAATTTACTTCCTGAAGGTGTTTTTATTATCAAAAGATCTCCAGAAGTGTCCTCCACCCCTTTGTCAAACACTTAGCCTTGATTTTGTGATTATTTTTTAGCAGATACAGGGTCAGCACATGCTCAGTTTTGTTGTGCCAATCGTAGATGTGTTAAGTATTATTTCTGTCATTTCAGTTAGATTAGATGTTATCAGTTGTAACTCATTTTAACATCTAATAGGATGTATTTTTGTTCCTAGAAGTGTGTAGGTATATTTTATAGTGTGTCTGTGTACTGTTTTGTTCGAAATCATAAATGTAAATGACATGAATTGCACATTTATGGTATTGCTTCTGTATCCACTTCTGCTGTGTCAATGAGTTGTGTCGGGACTGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTTGTCATATAGTTCATGTAGTGATTCATGTCACCCTAAACACTGGTGTTGAATTTAGCACTGATCAACAGCCACATTGGTTTCAGTACAGAACATAGAAATGTGCAATGAGATCAGTGCAGAGACGAACTGTTTTATGGAGTATTGAAGACGTTGAGGGCCTGAGGCCATTTACTATGCAAGAGAGAGATTGTTCTGATTCTTACATGCTTGTTTAGAGGCAATCACATCATATTTTTGTTTTTAAATTTTGGATTAATATAGTGTTGTCGAACTAATGGGTTTACTGTTTGTGGTCAGTTGTGAAAAACCAAAACTGAAATTATAACATCCTTTTTTTCTAATCAGTGTGACAAATAACATTGTGTATCTTGTCAATAGATAGTTGTACATAGATATTTAATTGATTAAGGTGAGTTGAGCAATAAA

Function

GO:

id name namespace
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG:

id description
K06997 yggS, PROSC; PLP dependent protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16802 lncRNA downstream 1479 3485842 ~ 3487407 (-) True G15030
TU16837 lncRNA downstream 123041 3365437 ~ 3365845 (-) True G15065
TU16836 lncRNA downstream 123653 3365034 ~ 3365233 (-) True G15064
TU16824 lncRNA downstream 143491 3344971 ~ 3345395 (-) True G15052
TU16822 lncRNA downstream 145095 3343393 ~ 3343791 (-) True G15050
TU16783 lncRNA upstream 630 3497483 ~ 3500208 (-) False CI01000001_03497808_03500098
TU16782 lncRNA upstream 726 3497579 ~ 3500208 (-) True CI01000001_03497808_03500098
TU16893 lncRNA upstream 196739 3693592 ~ 3702229 (-) True G15113
TU16879 lncRNA upstream 238933 3735786 ~ 3738369 (-) True G15099
TU16877 lncRNA upstream 307481 3804334 ~ 3835923 (-) True G15097
CI01000001_03474495_03481164.mRNA mRNA downstream 7453 3474495 ~ 3481433 (-) True CI01000001_03474495_03481164
CI01000001_03465138_03473769.mRNA mRNA downstream 15117 3464733 ~ 3473769 (-) True CI01000001_03465138_03473769
CI01000001_03455306_03461493.mRNA mRNA downstream 26984 3454607 ~ 3461902 (-) True CI01000001_03455306_03461493
CI01000001_03402460_03453617.mRNA mRNA downstream 35269 3402460 ~ 3453617 (-) True CI01000001_03402460_03453617
CI01000001_03277026_03283028.mRNA mRNA downstream 205436 3275743 ~ 3283450 (-) True CI01000001_03277026_03283028
CI01000001_03497808_03500098.mRNA mRNA upstream 815 3497668 ~ 3500098 (-) False CI01000001_03497808_03500098
CI01000001_03502743_03504170.mRNA mRNA upstream 5834 3502687 ~ 3504170 (-) True CI01000001_03502743_03504170
CI01000001_03515448_03525499.mRNA mRNA upstream 18119 3514972 ~ 3525499 (-) True CI01000001_03515448_03525499
CI01000001_03534862_03537560.mRNA mRNA upstream 37454 3534307 ~ 3537560 (-) True CI01000001_03534862_03537560
CI01000001_03603684_03607612.mRNA mRNA upstream 106493 3603346 ~ 3607612 (-) True CI01000001_03603684_03607612
TU15886 other downstream 1191674 2262344 ~ 2297212 (-) True G14188
TU15926 other downstream 1432408 2055974 ~ 2056478 (-) True G14228
TU15917 other downstream 1493988 1994210 ~ 1994898 (-) True G14219
TU15779 other downstream 1721428 1763669 ~ 1767458 (-) False G14104
TU14337 other downstream 3091753 367242 ~ 397133 (-) True G12898
TU17347 other upstream 895461 4392314 ~ 4399515 (-) True CI01000001_04395469_04399381
TU17350 other upstream 979431 4476800 ~ 4478145 (-) True G15528
TU17475 other upstream 1072229 4569082 ~ 4618357 (-) True G15639
TU17472 other upstream 1072624 4569477 ~ 4618357 (-) False G15639
TU17476 other upstream 1117322 4614175 ~ 4618357 (-) True G15639

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043281 False 1322 mRNA 0.46 8 NC_007134.7 33963619 ~ 33975156 (+)