RNA id: CI01000001_04746153_04754209.mRNA


Basic Information

Item Value
RNA id CI01000001_04746153_04754209.mRNA
length 1418
RNA type mRNA
GC content 0.46
exon number 10
gene id CI01000001_04746153_04754209
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4746133 ~ 4754209 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTAAGAATATGAGAACGAATGGAGCCTTGTGTCTGAGTGCAACACCTAAACAGAATCATGTTATAAATGAAGGAAATAGTGTAAACATGACTGTGGACATGAATGATTGGAGTAACAGGAGACAGGGCTTCATCTCTGTTTCCCAGCATTCCACTGGCTGCCTGATATGGGCACAACTGATCAAGGGTAGGGGTGTCACACAGGGGCACACGGCAATGTCTCTTCCACTGGATATACGCTCTGACCACAAAGAATCCTCGATGGGGACGCTGGAGAAACAACTCATCTGTCCCATCTGCATGGACGTGTTTACGAAACCAGTCGTGATTCTGCCCTGTCTGCACAACCTCTGCCGCAAGTGTGCCAATGAACTGTACCAGGTTGGAATCGGAGGCCGTTTCCGCTGCCCTACCTGTCGAAGTGAGGTTGTCTTGGACCGTCATGGAGTTTATGGACTGCAGCGCAATTTACTTGTGGAGAACATTATTGATGTTTACAAACAGGAGTCTGAAAGCTCTAGGCCTCCACCACCGAAGCCTCCTGCAGAGTTTAACTGTGCAGAGCATGAAGATGAGAAGCTTAATATTTATTGCCTCACGTGTCAGGTGGCCACCTGCTCTCTCTGTAAAGTGTTTGGGGCACACAAGAACTGCCAAGTAGTTCCCCTGCCTGATGTTTACAAGCAGCAGAAGGAAAACAGCAGGATTCAGATACAGATTCTGTGTGAGAAGTTTGATCGCATGTCTACCATTCTGGAGGAACGTCGTAAGATCATGATCCAACAAATCACTTCTGAGCAGGAACAAAAGACTGGCTGGACCCAGTATTTACTGCAAACCTACAATGAGCATGTGGACACAAACTCAAAGTTGATCCAGGCAGCCCAGAATGCCATAGAGGAGCCAGAGATGGCTTCTTTTGTCCAGACCTCAAAAGATCTTATCGAGAAGGTTGGTAAAGCATCTAATTGTTTCACTCTGGAGACACTGGATCCTGATTATGATAACATGGATCACTACAAAGTGGATTTCGATGCAGAAGAGAGAGTTCTGTATCAGCTGGATTTCATGGAGATTGAAGAAGAAGTGGAGGAAACACCTGAAAAACTGGAGTCAGAACCTGAATCTGAACCTGAACCAGTGCTGACCCCAGAACCTGACCCTGAACCAGATCAGGATCTGAAATCAGAGGCTTCTGAGATGACGAATCCCACACCAGAGACAACGGAGGACACTTGGGGACAAGTAGATGCCTGTGGAGACATCAGAAAAGTGGCTGTTTGTGAGAAGAATAGCTTAAGCACTTCTCAGGTTGTCACTCTAGTCCTTTATTTCCTGGCCTTTCTGGTCATCCTACAGCGAATATGGGGAAGCATTCAATACCTTATTTGTATATAGGAGAGGTGAAGTCTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17483 lncRNA downstream 42188 4701556 ~ 4703945 (-) True G15646
TU17541 lncRNA downstream 112440 4632369 ~ 4633693 (-) True G15704
TU17540 lncRNA downstream 114462 4630766 ~ 4631671 (-) True G15703
TU17469 lncRNA downstream 178124 4567744 ~ 4568009 (-) True G15638
TU17363 lncRNA downstream 279215 4463257 ~ 4466918 (-) True CI01000001_04465168_04466295
TU17573 lncRNA upstream 38266 4792475 ~ 4794669 (-) False G15729
TU17574 lncRNA upstream 38266 4792475 ~ 4794669 (-) True G15729
TU18310 lncRNA upstream 159959 4914168 ~ 4925699 (-) True G16367
TU18314 lncRNA upstream 172476 4926685 ~ 4926948 (-) True G16371
TU18316 lncRNA upstream 177549 4931758 ~ 4931973 (-) True G16373
CI01000001_04732844_04744038.mRNA mRNA downstream 2095 4732844 ~ 4744038 (-) True CI01000001_04732844_04744038
CI01000001_04726550_04727511.mRNA mRNA downstream 17923 4726404 ~ 4728210 (-) False CI01000001_04726550_04727511
CI01000001_04468566_04523431.mRNA mRNA downstream 222702 4468209 ~ 4523431 (-) False CI01000001_04468566_04523431
CI01000001_04465168_04466295.mRNA mRNA downstream 279838 4464812 ~ 4466295 (-) False CI01000001_04465168_04466295
CI01000001_04402985_04419845.mRNA mRNA downstream 326256 4402780 ~ 4419877 (-) True CI01000001_04402985_04419845
CI01000001_04757377_04759421.mRNA mRNA upstream 2210 4756419 ~ 4759507 (-) True CI01000001_04757377_04759421
CI01000001_04846242_04846925.mRNA mRNA upstream 91598 4845807 ~ 4847700 (-) True CI01000001_04846242_04846925
CI01000001_04944573_04950116.mRNA mRNA upstream 190276 4944485 ~ 4950116 (-) True CI01000001_04944573_04950116
CI01000001_05001068_05003302.mRNA mRNA upstream 246332 5000541 ~ 5003417 (-) True CI01000001_05001068_05003302
CI01000001_05003724_05017009.mRNA mRNA upstream 249446 5003655 ~ 5017009 (-) True CI01000001_05003724_05017009
TU17475 other downstream 17926 4569082 ~ 4618357 (-) True G15639
TU17472 other downstream 17926 4569477 ~ 4618357 (-) False G15639
TU17476 other downstream 17926 4614175 ~ 4618357 (-) True G15639
TU17470 other downstream 17926 4725927 ~ 4728207 (-) False CI01000001_04726550_04727511
TU17350 other downstream 267988 4476800 ~ 4478145 (-) True G15528
TU17581 other upstream 46692 4800901 ~ 4801395 (-) True G15736
TU18272 other upstream 196480 4950689 ~ 4957842 (-) True G16332
TU18440 other upstream 468568 5222777 ~ 5229585 (-) True G16462
TU18669 other upstream 1589895 6344104 ~ 6347955 (-) True G16664
TU18776 other upstream 1830271 6584480 ~ 6615589 (-) False G16753

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043915 True 1820 mRNA 0.46 9 NC_007134.7 17454691 ~ 17470146 (-)