RNA id: TU14288


Basic Information

Item Value
RNA id TU14288
length 314
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G12856
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 153967 ~ 154280 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGAAATCTGTAGGAAAAACAAAGTAAACTTGTACCAAGACACGCACCGTGGTCTCAAAGCAGTAATGGGACTGGCTTCTGCAATGACATACTGACAGCTTCAGCAGGGATGTAGCGACTGCTTAATGTGACTATAAAACCACCATCACGCACGTTTAAACATGCGCTTTGATATCCCTGTTATAAACACAAACATGTTTGTGCTGTAAACACTGTGTGACTAAATTATTCAGAGATGTAGACAGGTAAAAATGATGTAAATACACACATGCACATAAACTGCTGTCAAGGTTGCCAGAGGAATGAATTGCTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14266 lncRNA downstream 630 151614 ~ 153337 (-) False G12848
TU14264 lncRNA downstream 630 152082 ~ 153337 (-) True G12848
TU14261 lncRNA downstream 55062 98578 ~ 98905 (-) True G12846
TU14260 lncRNA downstream 56148 97338 ~ 97819 (-) True G12845
TU14259 lncRNA downstream 56769 96898 ~ 97198 (-) True G12844
TU14291 lncRNA upstream 10673 164953 ~ 166160 (-) True G12859
TU14303 lncRNA upstream 24495 178775 ~ 179035 (-) True G12866
TU14305 lncRNA upstream 30576 184856 ~ 185057 (-) True G12868
TU14315 lncRNA upstream 48718 202998 ~ 203217 (-) True G12877
TU14316 lncRNA upstream 49212 203492 ~ 203706 (-) True G12878
CI01000001_00124107_00131285.mRNA mRNA downstream 22587 123059 ~ 131380 (-) False CI01000001_00124107_00131285
CI01000001_00113458_00118362.mRNA mRNA downstream 35520 111929 ~ 118447 (-) True CI01000001_00113458_00118362
CI01000001_00105105_00108304.mRNA mRNA downstream 44123 104255 ~ 109844 (-) True CI01000001_00105105_00108304
CI01000001_00001500_00064341.mRNA mRNA downstream 88391 708 ~ 65576 (-) True CI01000001_00001500_00064341
CI01000001_00192545_00195828.mRNA mRNA upstream 37651 191931 ~ 196831 (-) True CI01000001_00192545_00195828
CI01000001_00218182_00220017.mRNA mRNA upstream 63377 217657 ~ 220116 (-) True CI01000001_00218182_00220017
CI01000001_00222940_00227735.mRNA mRNA upstream 68520 222800 ~ 228007 (-) True CI01000001_00222940_00227735
CI01000001_00238241_00249437.mRNA mRNA upstream 83961 238241 ~ 249437 (-) False CI01000001_00238241_00249437
CI01000001_00305883_00333574.mRNA mRNA upstream 151211 305491 ~ 333798 (-) True CI01000001_00305883_00333574
TU14263 other downstream 19042 129502 ~ 134925 (-) True G12848
TU14286 other downstream 28510 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU14333 other upstream 91725 257372 ~ 257517 (-) True G12894
TU14337 other upstream 212962 367242 ~ 397133 (-) True G12898
TU15779 other upstream 1609389 1763669 ~ 1767458 (-) False G14104
TU15917 other upstream 1839930 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 1901694 2055974 ~ 2056478 (-) True G14228

Expression Profile