RNA id: TU14311


Basic Information

Item Value
RNA id TU14311
length 774
lncRNA type antisense_over
GC content 0.28
exon number 3
gene id G12873
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 211309 ~ 212246 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTTTTTTTCTTTTATTCTTCTCATAATTGGAGGCGCAGCGATTACTACTACTAAGAGCTACTCACTCTAAATACTTGCACTTTTGTATGTTTTGTAAGCCTAAGGAAGGTTGATTGACTGAAATATTCAAATATTTTAGTGATTTTTGCAAACTCAAGTAGTTTGTGGGATTTTTTTAGTCATGATTCAGAGGCCTTGAGCTCAAAGCACGTCTGGTCCTTCTTCACCAAGGCCTTGTGGACTCCGGTGTAGTAGGTGGCCGACACCTGGCTGTGGAGGGTGACGCTACGTGGTGAGTTGCATTTGTTCTTCAAAGCGATGCAGAGCACGGCTTCCTTGCCCACACACAGTCCATCACCCTTCATGGTGACATCACAGACAACATCCTCAGCGCAGGGCAGTGGGTATGTGCATCTCCTGGAGCCGTGACGAAGGGCTGTCTCCACAGCACGACGCTCCTCCTCTGAACCTTCTGGGTGTTTGTAGCAGTTTGTGATATCCACACGCTTGTCTGAGCCGACAGCCTTGGTGCTGATGCAGTGACCTACTGCGTTCTTGTCAACATAGACAGCACCGAAGGTTCCACATGCTGTCCTCTGCCAGAAGACTACGTCACTGTTCACCTAGAGCAAGAAAATTTAATTTTCAGTACTAATAAACAGGAAAATAACAGAATCAATGATGCAAGCTTCATCAAATATGAGACTTCAAATTCTGTCATCATCCAGCTCAATTCAGCTCAAGTTTTGTTCTCATCTGATATTGTCAGTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14318 lncRNA downstream 1951 209149 ~ 209358 (-) True G12880
TU14316 lncRNA downstream 7603 203492 ~ 203706 (-) True G12878
TU14315 lncRNA downstream 8092 202998 ~ 203217 (-) True G12877
TU14305 lncRNA downstream 26252 184856 ~ 185057 (-) True G12868
TU14303 lncRNA downstream 32274 178775 ~ 179035 (-) True G12866
TU14361 lncRNA upstream 65798 278044 ~ 278289 (-) True G12920
TU14362 lncRNA upstream 70309 282555 ~ 282782 (-) True G12921
TU14374 lncRNA upstream 123479 335725 ~ 336033 (-) True G12933
TU14335 lncRNA upstream 146625 358871 ~ 359739 (-) True G12896
TU14386 lncRNA upstream 193085 405331 ~ 406159 (-) True G12945
CI01000001_00192545_00195828.mRNA mRNA downstream 14478 191931 ~ 196831 (-) True CI01000001_00192545_00195828
CI01000001_00124107_00131285.mRNA mRNA downstream 79929 123059 ~ 131380 (-) False CI01000001_00124107_00131285
CI01000001_00113458_00118362.mRNA mRNA downstream 92862 111929 ~ 118447 (-) True CI01000001_00113458_00118362
CI01000001_00105105_00108304.mRNA mRNA downstream 101465 104255 ~ 109844 (-) True CI01000001_00105105_00108304
CI01000001_00001500_00064341.mRNA mRNA downstream 145733 708 ~ 65576 (-) True CI01000001_00001500_00064341
CI01000001_00218182_00220017.mRNA mRNA upstream 5411 217657 ~ 220116 (-) True CI01000001_00218182_00220017
CI01000001_00222940_00227735.mRNA mRNA upstream 10554 222800 ~ 228007 (-) True CI01000001_00222940_00227735
CI01000001_00238241_00249437.mRNA mRNA upstream 25995 238241 ~ 249437 (-) False CI01000001_00238241_00249437
CI01000001_00305883_00333574.mRNA mRNA upstream 93245 305491 ~ 333798 (-) True CI01000001_00305883_00333574
CI01000001_00362143_00378213.mRNA mRNA upstream 149368 361614 ~ 378213 (-) False CI01000001_00362143_00378213
TU14263 other downstream 76384 129502 ~ 134925 (-) True G12848
TU14286 other downstream 85852 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU14333 other upstream 33759 257372 ~ 257517 (-) True G12894
TU14337 other upstream 154996 367242 ~ 397133 (-) True G12898
TU15779 other upstream 1551423 1763669 ~ 1767458 (-) False G14104
TU15917 other upstream 1781964 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 1843728 2055974 ~ 2056478 (-) True G14228

Expression Profile