RNA id: TU14335


Basic Information

Item Value
RNA id TU14335
length 869
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G12896
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 358871 ~ 359739 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGACAGAATTGTCATTTTTGGGCGAACTATCCCTTTAACCCAACCTCTGGGTTAAAACAACCCAATCACTGGCTTTGTCCATTTTCAACCCAACTTGGGTTGTTTTTAACCCAGCAGTTTTTAGTGTGAATCATGACGTAATAAGCAGAATCTCTTTAAATCTGAAATGCTGCTACCTATGTCTTTCCTCTGCCTTATCAAATGAAGTGAAGTTTTGAGGATTTGTTTGTAGAGCTGTTGATAAAGGGCTGATTTGTTTTTGTTTTTTTTTGAAAACTCCTCTGTTCATCAATAGGCTCGTAACACGAGCTGTCGGTACGGCCCTGTAAGTGCTGCTGCATCATGTAGCTGTTTCCATCCCAGCCCTGTGAGATACAAACAATCAATATGTCATGGGGCTCATGGAAAACCAAGTATCCTATATAGGACATATTATAAAGCGATTTCTCTTGTAAACAACAAAAGACTATCTGTGATTTTGTTGTAATCAGTATCAGTGGATGGTCAGTGGACACCATGCAAAAAAAAAGAAGCAGGGATCAATTACATATCTTGAAATGAAGAAACTGTAAATCTTGATATGCAAATGCTAAAAAAGTATACAGAAATGTTGCACAAAATCTGTTCGCAGATCTCATGAAATGGTGGGTGAAGGTTTAAAACAAGCACAACTTGTTTACTGAGATGTCAGGGACAGATTTTTTAGTAAAGACTTATTTAAAGAGCACTTGTCATAAAGCACCCATGTGCCCTTTTACCTAACCAACAGCACTGAGTACCACTTTAAAAAACTGAAGCGTTTTCTCCCAACCAAGTCGATCTATATGCATGTACAAATTATGAAAATCAATAAAACTTTTTATCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14374 lncRNA downstream 22838 335725 ~ 336033 (-) True G12933
TU14362 lncRNA downstream 76089 282555 ~ 282782 (-) True G12921
TU14361 lncRNA downstream 80582 278044 ~ 278289 (-) True G12920
TU14311 lncRNA downstream 146625 211309 ~ 212246 (-) True G12873
TU14318 lncRNA downstream 149513 209149 ~ 209358 (-) True G12880
TU14386 lncRNA upstream 45592 405331 ~ 406159 (-) True G12945
TU14387 lncRNA upstream 53945 413684 ~ 413948 (-) True G12946
TU14396 lncRNA upstream 145110 504849 ~ 505048 (-) True G12955
TU14402 lncRNA upstream 193664 553403 ~ 553752 (-) True CI01000001_00538192_00559082
TU14404 lncRNA upstream 245362 605101 ~ 606584 (-) True G12963
CI01000001_00305883_00333574.mRNA mRNA downstream 25073 305491 ~ 333798 (-) True CI01000001_00305883_00333574
CI01000001_00238241_00249437.mRNA mRNA downstream 109434 238241 ~ 249437 (-) False CI01000001_00238241_00249437
CI01000001_00222940_00227735.mRNA mRNA downstream 130864 222800 ~ 228007 (-) True CI01000001_00222940_00227735
CI01000001_00218182_00220017.mRNA mRNA downstream 138755 217657 ~ 220116 (-) True CI01000001_00218182_00220017
CI01000001_00192545_00195828.mRNA mRNA downstream 162040 191931 ~ 196831 (-) True CI01000001_00192545_00195828
CI01000001_00362143_00378213.mRNA mRNA upstream 1875 361614 ~ 378213 (-) False CI01000001_00362143_00378213
CI01000001_00445369_00466166.mRNA mRNA upstream 85501 445240 ~ 466897 (-) True CI01000001_00445369_00466166
CI01000001_00493196_00498517.mRNA mRNA upstream 133026 492765 ~ 498517 (-) True CI01000001_00493196_00498517
CI01000001_00500347_00500698.mRNA mRNA upstream 140344 500083 ~ 500698 (-) True CI01000001_00500347_00500698
CI01000001_00506140_00517386.mRNA mRNA upstream 146015 505754 ~ 517386 (-) True CI01000001_00506140_00517386
TU14333 other downstream 101354 257372 ~ 257517 (-) True G12894
TU14263 other downstream 223946 129502 ~ 134925 (-) True G12848
TU14286 other downstream 233414 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU14337 other upstream 7503 367242 ~ 397133 (-) True G12898
TU15779 other upstream 1403930 1763669 ~ 1767458 (-) False G14104
TU15917 other upstream 1634471 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 1696235 2055974 ~ 2056478 (-) True G14228
TU15886 other upstream 1899650 2262344 ~ 2297212 (-) True G14188

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00045106 True 1741 lncRNA 0.36 2 NC_007134.7 39940240 ~ 39942116 (-)