RNA id: TU14747


Basic Information

Item Value
RNA id TU14747
length 290
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G13236
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 860239 ~ 860528 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGTGATGGAAAAATTATGAGATATGAGGGAAAAAATGAGAAACTTTGGGTTTGCTCAGAAAACCTTTGTGTTCCCTCGCAAAAACGTTTGTGTTCCAACAAGAAACTTTGCATTCTCTCGCAAAGAACTCAAAAGGTTTGCGAGCGAAATTTTCTTGGGGAAATGCAAATATTTTGCGAGAGAACGCAAAGTTTCTTGGGGGAACGCAAAAATTTTGCGAGAGAACGCAAAGTTTCTCGGTGGAACGTAAAAATTTTGCGCAAGAACGCAAAGTTTCTTGGGGGAACGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14450 lncRNA downstream 30621 829368 ~ 829618 (-) True G13009
TU14440 lncRNA downstream 39651 820389 ~ 820588 (-) True G12999
TU14438 lncRNA downstream 42112 817787 ~ 818127 (-) True G12997
TU14346 lncRNA downstream 148923 614220 ~ 711316 (-) True G12907
TU14404 lncRNA downstream 253655 605101 ~ 606584 (-) True G12963
TU14731 lncRNA upstream 10278 870806 ~ 871321 (-) False CI01000001_00872245_00878013
TU14729 lncRNA upstream 10334 870862 ~ 871321 (-) False CI01000001_00872245_00878013
TU14730 lncRNA upstream 10334 870862 ~ 871455 (-) True CI01000001_00872245_00878013
TU14773 lncRNA upstream 55720 916248 ~ 916447 (-) True G13262
TU14775 lncRNA upstream 58711 919239 ~ 919520 (-) True G13264
CI01000001_00839822_00841040.mRNA mRNA downstream 17818 839630 ~ 842421 (-) True CI01000001_00839822_00841040
CI01000001_00808831_00814314.mRNA mRNA downstream 45598 807938 ~ 814641 (-) True CI01000001_00808831_00814314
CI01000001_00754687_00806154.mRNA mRNA downstream 53697 754565 ~ 806542 (-) True CI01000001_00754687_00806154
CI01000001_00716122_00741331.mRNA mRNA downstream 118619 716103 ~ 741620 (-) True CI01000001_00716122_00741331
CI01000001_00636063_00642086.mRNA mRNA downstream 217860 636042 ~ 642379 (-) True CI01000001_00636063_00642086
CI01000001_00872245_00878013.mRNA mRNA upstream 10352 870880 ~ 878013 (-) False CI01000001_00872245_00878013
CI01000001_00925612_00928679.mRNA mRNA upstream 64912 925440 ~ 928949 (-) True CI01000001_00925612_00928679
CI01000001_01030701_01030988.mRNA mRNA upstream 169726 1030254 ~ 1031164 (-) True CI01000001_01030701_01030988
CI01000001_01033836_01034518.mRNA mRNA upstream 172808 1033336 ~ 1034675 (-) False CI01000001_01033836_01034518
CI01000001_01056812_01066005.mRNA mRNA upstream 195924 1056452 ~ 1066123 (-) True CI01000001_01056812_01066005
TU14337 other downstream 463106 367242 ~ 397133 (-) True G12898
TU14333 other downstream 602722 257372 ~ 257517 (-) True G12894
TU14263 other downstream 725314 129502 ~ 134925 (-) True G12848
TU14286 other downstream 734782 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU15779 other upstream 903141 1763669 ~ 1767458 (-) False G14104
TU15917 other upstream 1133682 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 1195446 2055974 ~ 2056478 (-) True G14228
TU15886 other upstream 1398861 2262344 ~ 2297212 (-) True G14188
TU17347 other upstream 3531786 4392314 ~ 4399515 (-) True CI01000001_04395469_04399381

Expression Profile