RNA id: TU15278


Basic Information

Item Value
RNA id TU15278
length 636
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G13674
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1666424 ~ 1667059 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATAATTTTCGTCAACAACATTTTTTCACGGGCGAAAACGAGACGATGACTAAATAAAAATGCGTTTTGAATGACTAAAACTATGTCTAAAATCTACTCTAATTTTCGTCAACGAAAAAAAAAATGATAGAGAGGGACGATTTGGGAAGATATCCAGTCAGGACTGCTGTCCTGTGTGGAAGATGTGCACATTTGAAGTGTAACGTGTTGTTCTAACCGCGGGAAAAGCGGCGCTATTGCGCGCTCTACAGGCTCGCCCAGCAGCACTTCAGACTGCTTCGCAATCAATGAATAGCGCACATTTATACCAAGTGATTGCTTGTAAGCTAATGTTGATGAATTATGACAATGTTTACCACACGATGTTTATATGCTAGTATGTTTTAGACGGTTGTAAGAATGCATATTTTATCTCCCTCATCTGAACTTAAATGAGCAGCCTGCTACAGTGCAGACTGCAGACATTTCAGAATAAGAGTCACGGTGTATTTCGGAATGGTTTATAATTATTATTTCTTCCTGGTCATTATTGTTAATTTGTTTACGCAATAAACTGTATTTAATTTAATTTCTATTTAATTCATAGTAAACTACTGTATCTTCTGTCACAGGAAGGAAAGACTAAGAACATTTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15255 lncRNA downstream 5715 1660255 ~ 1660709 (-) True G13656
TU15275 lncRNA downstream 16994 1649192 ~ 1649430 (-) True G13671
TU15274 lncRNA downstream 18136 1648062 ~ 1648288 (-) True G13670
TU15175 lncRNA downstream 90227 1556243 ~ 1576197 (-) True G13582
TU15213 lncRNA downstream 254773 1411444 ~ 1411651 (-) True G13619
TU15282 lncRNA upstream 8747 1675806 ~ 1676078 (-) True G13678
TU15283 lncRNA upstream 9480 1676539 ~ 1676893 (-) True G13679
TU15769 lncRNA upstream 82047 1749106 ~ 1753231 (-) False G14096
TU15770 lncRNA upstream 83134 1750193 ~ 1750729 (-) True G14096
TU15775 lncRNA upstream 87388 1754447 ~ 1754991 (-) True G14100
CI01000001_01637015_01638058.mRNA mRNA downstream 28366 1636695 ~ 1638058 (-) True CI01000001_01637015_01638058
CI01000001_01582644_01584095.mRNA mRNA downstream 81984 1582644 ~ 1584440 (-) True CI01000001_01582644_01584095
CI01000001_01565290_01569360.mRNA mRNA downstream 97064 1565290 ~ 1569360 (-) True CI01000001_01565290_01569360
CI01000001_01555180_01558113.mRNA mRNA downstream 108311 1554301 ~ 1558113 (-) True CI01000001_01555180_01558113
CI01000001_01476453_01500640.mRNA mRNA downstream 165456 1475534 ~ 1500968 (-) True CI01000001_01476453_01500640
CI01000001_01707363_01743870.mRNA mRNA upstream 40030 1707089 ~ 1743870 (-) True CI01000001_01707363_01743870
CI01000001_01757774_01758445.mRNA mRNA upstream 90130 1757189 ~ 1759443 (-) True CI01000001_01757774_01758445
CI01000001_01760676_01761671.mRNA mRNA upstream 93107 1760166 ~ 1761671 (-) True CI01000001_01760676_01761671
CI01000001_01772744_01773670.mRNA mRNA upstream 105272 1772331 ~ 1773670 (-) True CI01000001_01772744_01773670
CI01000001_01873684_01874535.mRNA mRNA upstream 206581 1873640 ~ 1874535 (-) True CI01000001_01873684_01874535
TU14337 other downstream 1269291 367242 ~ 397133 (-) True G12898
TU14333 other downstream 1408907 257372 ~ 257517 (-) True G12894
TU14263 other downstream 1531499 129502 ~ 134925 (-) True G12848
TU14286 other downstream 1540967 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU15779 other upstream 96610 1763669 ~ 1767458 (-) False G14104
TU15917 other upstream 327151 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 388915 2055974 ~ 2056478 (-) True G14228
TU15886 other upstream 592330 2262344 ~ 2297212 (-) True G14188
TU17347 other upstream 2725255 4392314 ~ 4399515 (-) True CI01000001_04395469_04399381

Expression Profile