RNA id: TU15770


Basic Information

Item Value
RNA id TU15770
length 285
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id G14096
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1749106 ~ 1753231 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTCTAAATAAATTAAAAAAGACCTCAAACTGTAGTGTAAATTCAGTTTTTTTTCCCTCAGATGTCATTGCTTTAACACTCATATGAAGTACTCACAGTCTCAGCTCCTCGAAGGTCTTGACTGAATACAGTGGTGAGTTTGGGTCTCTCTGAAGAACCTCCACTTGATTTGTGTTGTTGACCACATTGCTTCTGATCAGCTTATTAAGGAGAGACTGTGTGGCTTTGTCCTCTTTTTCCTCTTCGTCAGATTTGTCACCATCATCTACAGGAGGGAAAAATAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15283 lncRNA downstream 73300 1676539 ~ 1676893 (-) True G13679
TU15282 lncRNA downstream 74115 1675806 ~ 1676078 (-) True G13678
TU15278 lncRNA downstream 83134 1666424 ~ 1667059 (-) True G13674
TU15255 lncRNA downstream 89484 1660255 ~ 1660709 (-) True G13656
TU15275 lncRNA downstream 100763 1649192 ~ 1649430 (-) True G13671
TU15775 lncRNA upstream 3718 1754447 ~ 1754991 (-) True G14100
TU15782 lncRNA upstream 17227 1767956 ~ 1771468 (-) True G14104
TU15791 lncRNA upstream 116906 1867635 ~ 1871566 (-) True G14112
TU15955 lncRNA upstream 142977 1893706 ~ 1896090 (-) True G14257
TU15957 lncRNA upstream 169866 1920595 ~ 1920846 (-) True G14259
CI01000001_01707363_01743870.mRNA mRNA downstream 6323 1707089 ~ 1743870 (-) True CI01000001_01707363_01743870
CI01000001_01637015_01638058.mRNA mRNA downstream 112135 1636695 ~ 1638058 (-) True CI01000001_01637015_01638058
CI01000001_01582644_01584095.mRNA mRNA downstream 165753 1582644 ~ 1584440 (-) True CI01000001_01582644_01584095
CI01000001_01565290_01569360.mRNA mRNA downstream 180833 1565290 ~ 1569360 (-) True CI01000001_01565290_01569360
CI01000001_01555180_01558113.mRNA mRNA downstream 192080 1554301 ~ 1558113 (-) True CI01000001_01555180_01558113
CI01000001_01757774_01758445.mRNA mRNA upstream 6460 1757189 ~ 1759443 (-) True CI01000001_01757774_01758445
CI01000001_01760676_01761671.mRNA mRNA upstream 9437 1760166 ~ 1761671 (-) True CI01000001_01760676_01761671
CI01000001_01772744_01773670.mRNA mRNA upstream 21602 1772331 ~ 1773670 (-) True CI01000001_01772744_01773670
CI01000001_01873684_01874535.mRNA mRNA upstream 122911 1873640 ~ 1874535 (-) True CI01000001_01873684_01874535
CI01000001_01902970_01917410.mRNA mRNA upstream 151700 1902429 ~ 1917454 (-) True CI01000001_01902970_01917410
TU14337 other downstream 1353060 367242 ~ 397133 (-) True G12898
TU14333 other downstream 1492676 257372 ~ 257517 (-) True G12894
TU14263 other downstream 1615268 129502 ~ 134925 (-) True G12848
TU14286 other downstream 1624736 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU15779 other upstream 12940 1763669 ~ 1767458 (-) False G14104
TU15917 other upstream 243481 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 305245 2055974 ~ 2056478 (-) True G14228
TU15886 other upstream 508660 2262344 ~ 2297212 (-) True G14188
TU17347 other upstream 2641585 4392314 ~ 4399515 (-) True CI01000001_04395469_04399381

Expression Profile