RNA id: TU15375


Basic Information

Item Value
RNA id TU15375
length 204
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G13763
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1780156 ~ 1780359 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAACATGATTTCTACCAGAAAGACTTGGGAGGCATGATAACGTAACAACGATAATTATTAACAATCAGCAAGCAAAATATTGTAAGATAAAGTTCTTTGGCGTATGCCCCGTCCGTAGCTCACATCCTAAAAGGTTGCGGACTCTGCATTTCCTGCCTGAAGATGAAGGCAGGGGCATAGCCGACCCCCTGGGAGGTATGGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15373 lncRNA upstream 1399 1778385 ~ 1778757 (+) True G13761
TU15301 lncRNA upstream 75719 1702984 ~ 1704437 (+) True G13697
TU15137 lncRNA upstream 97033 1682764 ~ 1683123 (+) True G13574
TU15115 lncRNA upstream 108989 1668020 ~ 1671167 (+) False CI01000001_01668334_01670035
TU15133 lncRNA upstream 115664 1664265 ~ 1664492 (+) True G13570
TU15396 lncRNA downstream 121912 1902271 ~ 1907118 (+) True G13778
TU15329 lncRNA downstream 149145 1929504 ~ 1933413 (+) True G13721
TU15407 lncRNA downstream 158751 1939110 ~ 1939319 (+) True G13789
TU15409 lncRNA downstream 194604 1974963 ~ 1975198 (+) True G13791
TU15336 lncRNA downstream 201268 1981627 ~ 1983612 (+) True G13726
CI01000001_01762809_01771029.mRNA mRNA upstream 9127 1762809 ~ 1771029 (+) True CI01000001_01762809_01771029
CI01000001_01748436_01754956.mRNA mRNA upstream 25200 1748338 ~ 1754956 (+) True CI01000001_01748436_01754956
CI01000001_01668334_01670035.mRNA mRNA upstream 109131 1667762 ~ 1671025 (+) False CI01000001_01668334_01670035
CI01000001_01656726_01659321.mRNA mRNA upstream 120726 1656057 ~ 1659430 (+) True CI01000001_01656726_01659321
CI01000001_01589727_01595957.mRNA mRNA upstream 183867 1589727 ~ 1596289 (+) True CI01000001_01589727_01595957
CI01000001_01833609_01860272.mRNA mRNA downstream 52902 1833261 ~ 1860953 (+) True CI01000001_01833609_01860272
CI01000001_01868471_01873459.mRNA mRNA downstream 88112 1868471 ~ 1873519 (+) True CI01000001_01868471_01873459
CI01000001_01878297_01894123.mRNA mRNA downstream 97938 1878297 ~ 1896084 (+) True CI01000001_01878297_01894123
CI01000001_01918301_01923330.mRNA mRNA downstream 137644 1918003 ~ 1923379 (+) True CI01000001_01918301_01923330
CI01000001_01955349_01972242.mRNA mRNA downstream 174990 1955349 ~ 1973010 (+) True CI01000001_01955349_01972242
TU15116 other upstream 109152 1668020 ~ 1671004 (+) True CI01000001_01668334_01670035
TU14532 other upstream 735004 1043713 ~ 1045152 (+) True G13051
TU14049 other upstream 1288099 490574 ~ 492057 (+) True G12653
TU14066 other upstream 1295746 478386 ~ 478781 (+) True G12670
TU13987 other upstream 1469215 309144 ~ 310941 (+) True G12614
TU16602 other downstream 1835889 3616248 ~ 3616411 (+) True G14846
TU17650 other downstream 3280859 5061218 ~ 5064704 (+) False G15794
TU17651 other downstream 3280859 5061218 ~ 5063929 (+) True G15794
TU17699 other downstream 3506390 5289881 ~ 5289956 (+) True G15838
TU17891 other downstream 3931526 5711885 ~ 5714951 (+) True G15995

Expression Profile