RNA id: TU15336


Basic Information

Item Value
RNA id TU15336
length 1709
lncRNA type intronic
GC content 0.33
exon number 2
gene id G13726
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1981627 ~ 1983612 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGTAATTACAGTCGTTACATGCATTATGTGAACACAATGTAACAACTTGTCTTAATGTAACAACATCTTAAGGTGTTAAAACAGCTCTAAAAATACCGTGTAAATTACAACTGTTATGGATCTAATTGTGCCTTACAAACCTAAAAGGAATAAATAACAGAAACCATGTTTTTGGAAATCTCTGAAAAATATATTTGGTCCAAACACTGATTTGCAAAATAAATAAAATGCAACAATAAGGCATTTCATACTAAATCAGCTCAGTGTTGCTAGAGTATTTCTACTACAAACTACAAAATTCCTCTTTTCGGCATTAAGGCTAACCGCATAAAATAGCTCAAATAAGAGAAAATAATAGTGTGTGCTCCATCCATCCATATAAACAGTCAGCATTCAATTCATAATATTACTTTAATCTAGACCTTTACTGTACACTTAGGGTCCCCGGCTGGTAATTTTTCTTTCTTTTCTTTTTCTTTTTTTTTTTTTTTTTACAAAGTATCTCGTTTCCCTCCTCACAACATTCTAGTGCTGCATATATCAAGTGAAGCTAGCATGCACTTAAAGCATCAGACAACATGAGTTTCTGCTATTCCTCCAGAATCGGTTCAGCAAATGGTTAAGGCGGTGGATTCTCTCTCTGCCAATCCAAAGTCCAAAGAAAGAGAGGGAGAGAGTGAGAGAGCACACCAAGAACAAGTTATGTCACTGCTACAGGTTTGGAGTCATATCTCCTTAAAAGATTAGGCAATGTTCCCATGTTTGTGGGTTGTGATTCACGTGAATCTAGTTCTATTAATCTGTGAAGATGCACTTAATGAATGTAGCTGTAGTGTGGATGAGAATGTCAACATGTCAACATGTCATGCTTAAATATCGTGTTATGAAACGCTATGAAAATATGAAGCACAGCCAAAAGGCGCTAAAAGATATCAACTAATATGACAACAGTAGATAGAAACTGCAAAGACATGTTGAGTGAATCTGACAAAACCTGTGAAGGACATGTCCGGTGTATATTTCATCCTAAAATTCAAAAGAAAGAAATAAGATGTTATATTTTGCTTAAAAATTAAGCCTATTAATCCTTAATTTTTTTTTTTTTGTATTCACAAATTATTTTCATTACAATTAAGCACATTTCCCCTCCAAATTCTCATTATATGCAAAAGAAATAATAGTATATGCACTGTATTATTGTAATGAGCATGTGTGTGTTGTAAAATCTGTAAAATCGATTAATCGCATCTAACACACATTATGTATGCATATATATATAAATACACATATATATAAATAAATGACTATTGTTGCAATGAGAATCTCAAAAAAAAAAAAATGTAAAAAAACATCTGGACACATTACAGTAATGACAATTTGGGGAGGGGGCAAATGTGTTTTACTGTCATAAAAATAATGTCAAAATGAAATATAACTAAATGGTCCTAAAAAAGGCCTAATTTCTGCAATGCAAAATATAATTTAATTCTTTTATTTTGATTTTGGGGTAAAATGTGACCTTAAAATGTTGATAAGGACACCCAGAAGTGGTTACGCAAAAATGTTGGAGATGAATTCACGGAATCGTTTGGCATACTGCTCTGGATGAACCGTAGATATTTCAGCACCAGCCTGAAAGGAAGGAAAAGGATGAGTCATGTTATTATAACCTCCTATATCTCAAATCATGTCAGGCATGTACGCATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15409 lncRNA upstream 6429 1974963 ~ 1975198 (+) True G13791
TU15407 lncRNA upstream 42308 1939110 ~ 1939319 (+) True G13789
TU15329 lncRNA upstream 48214 1929504 ~ 1933413 (+) True G13721
TU15396 lncRNA upstream 74509 1902271 ~ 1907118 (+) True G13778
TU15375 lncRNA upstream 201268 1780156 ~ 1780359 (+) True G13763
TU15415 lncRNA downstream 20549 2004161 ~ 2005163 (+) False G13796
TU15414 lncRNA downstream 20578 2004190 ~ 2005060 (+) True G13796
TU15330 lncRNA downstream 87542 2071154 ~ 2076549 (+) True G13722
TU15345 lncRNA downstream 118545 2102157 ~ 2103468 (+) True G13735
TU15433 lncRNA downstream 160045 2143657 ~ 2143868 (+) True G13812
CI01000001_01955349_01972242.mRNA mRNA upstream 8617 1955349 ~ 1973010 (+) True CI01000001_01955349_01972242
CI01000001_01918301_01923330.mRNA mRNA upstream 58248 1918003 ~ 1923379 (+) True CI01000001_01918301_01923330
CI01000001_01878297_01894123.mRNA mRNA upstream 85543 1878297 ~ 1896084 (+) True CI01000001_01878297_01894123
CI01000001_01868471_01873459.mRNA mRNA upstream 108108 1868471 ~ 1873519 (+) True CI01000001_01868471_01873459
CI01000001_01833609_01860272.mRNA mRNA upstream 120674 1833261 ~ 1860953 (+) True CI01000001_01833609_01860272
CI01000001_02009224_02019961.mRNA mRNA downstream 23482 2007094 ~ 2020191 (+) True CI01000001_02009224_02019961
CI01000001_02084996_02088477.mRNA mRNA downstream 101384 2084996 ~ 2089332 (+) True CI01000001_02084996_02088477
CI01000001_02090800_02101722.mRNA mRNA downstream 107075 2090687 ~ 2101866 (+) True CI01000001_02090800_02101722
CI01000001_02106280_02114656.mRNA mRNA downstream 122367 2105979 ~ 2115251 (+) True CI01000001_02106280_02114656
CI01000001_02152125_02157921.mRNA mRNA downstream 168409 2152021 ~ 2158623 (+) False CI01000001_02152125_02157921
TU15116 other upstream 310623 1668020 ~ 1671004 (+) True CI01000001_01668334_01670035
TU14532 other upstream 936475 1043713 ~ 1045152 (+) True G13051
TU14049 other upstream 1489570 490574 ~ 492057 (+) True G12653
TU14066 other upstream 1497217 478386 ~ 478781 (+) True G12670
TU13987 other upstream 1670686 309144 ~ 310941 (+) True G12614
TU16602 other downstream 1632636 3616248 ~ 3616411 (+) True G14846
TU17650 other downstream 3077606 5061218 ~ 5064704 (+) False G15794
TU17651 other downstream 3077606 5061218 ~ 5063929 (+) True G15794
TU17699 other downstream 3303137 5289881 ~ 5289956 (+) True G15838
TU17891 other downstream 3728273 5711885 ~ 5714951 (+) True G15995

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU176519 True 231 lncRNA 0.34 1 CI01000029 7418805 ~ 7419035 (+)
tiger barb (Puntius tetrazona) TU176519 True 450 lncRNA 0.61 2 NC_056715.1 9520135 ~ 9540489 (+)
mexican tetra (Astyanax mexicanus) TU176519 True 1383 TUCP 0.41 3 NC_035911.1 9117170 ~ 9119782 (+)