RNA id: CI01000003_01280201_01309764.mRNA



Basic Information


Item Value
RNA id CI01000003_01280201_01309764.mRNA
length 1809
RNA type mRNA
GC content 0.43
exon number 7
gene id CI01000003_01280201_01309764
representative True

Chromosome Information


Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 1279767 ~ 1310125 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATTAATGCAAATGCAACCAGTCAAACTTTTTTACAGTGTATGTATGTGACTTGGCCTGTTAGCCAGAGTGCTAATGAACAAGACAGTTGTTAGAGATATCCATCTCATCCTTTTCATTCGTACTTTTGCATTATGTTCCCACACCATTATGAGGATGATGTTTATTCAAGGTGAGGGTCATTAGTTTTAGATTTAGCCTGATCTGGTTTGAGCATTCATGCTAATGTGAGAGGCTTTGATGGCTTCAGACTGGGTGCTTTGTGCTGGTCCATTAGTGATAAAGGCCATCAGAGAGTTTAATGTGCACTGCGCTCATTTAGCGGCTAGGCTACCGGATGAGTCTAGCAGAGACGCACCTCATTTTCAGCTCTTTGGCAACCTTGACCCCACTTCAAAAGTCAGCATGTCCACAACTAATCTCCATGACACACAATGGCCAAACTTGCGTCAGGGCTGCTACGGTCCCTCAAGAAAACATGCTTAAGACATTACAATGGGACCAAGCCATACTGGGCTTATTTTGCCAGCTCCAGAATTTCAGATTTATCACAGCAGCAGTGCAGCAAGTATGTGATGGAAAATTGGATGCCTTTGCCACAGATGGAGAGCTCTGCTGGTTTAAGGAGAAGTTTCCGGCTGAGCCGGAAGGACAACACGAGTCAGCAGGTGAGACAGAAGATGGGTGAAGCACATGCTGCTATCCATTTCCCTGTTTATCAGGAGGTTTTGCCTCACCAGAGAAAGCCTGAAGAGCCGCACCGCCTTGTGCTTCTAACTGGGCCTATAGGGGTTGGTGTGACCGAGTTGAAGAGAAGACTTCTACTCTCTGACCCAGAACACTTCAGTGTAACTGTGCCACATACCACTCGGGAGCGGAAAAAGCAAGAAAGAGAAGGGGTGGAGTACCATTTTGTCTCCAAACACACTTTTGAAAAAGATATCCTCAACCACAAATTTTTGGAGTATGGTGAACATAAAGGGAACTACTATGGTATGAGTCTGGATTCGGTGCGCAGGGTCATGGCGGAGAGCAAGGTCTGCCTGTTGGATGTGGAACCTCACGTGAGTAAAAGATCATTCATGAATGGCAGGGTGTGTGAGTGGCAAGAAGCACTGGATCAGACTATAGCAGCCCTTTATTCCTCCGAGTTTAAACCCTATATTGTATTTGTGAAGCCTCCATCAATAGAGCGCTTAAGACTGAGCCGAAGAAAAGCAAAAGTTCTGGCAAGTCAGAATGAGCAAACAGCCACAAAATTCTTTACGGAGGAGGACTTCCAGGACATGATTACCACTGCCCAAGCCATGGAGTATAAATATGGCCACTTGTTTGAGAAAGTGATCATCAATGACGATCTGGCCATGGCATTCACTGAGCTGAGAGACGAACTCACAAAGATAGAAACAGAGACTCACTGGATCCCAAATACATGGGCTCATGTCTGAGAAAGCAATTCATGTTCACTGAACCACTTAGACACATGATAACTTTTGACTGTTTTGGATATTTTCTGCATATAAAAAGGTACACCATATTATTGTAATTATACGCTTATAAGCAGTGTGTGCTGGCCCGTCATGAATCAGCTCCATTCATAACTGCCAAACTCATGACATTGCACTGAAGTTGAAACAGTTTTGTTTATGTTGAGAAACAAGTAATTGTAAAGAATTTTTATCTCCCCCTAATTCCTACATAATGATATACATTATGCTATTTTACTAAATGATTTCTATACACATATTGCTTTGTGCACTGTTGTGGCTCATGTTTTGACATTAATCACTTACAGACGGGGATTTTCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU26018 lncRNA upstream 57105 1176830 ~ 1222662 (+) True G23056
TU25999 lncRNA upstream 209259 1070290 ~ 1070508 (+) True G23039
TU25548 lncRNA upstream 350620 928942 ~ 929147 (+) True G22641
TU25532 lncRNA upstream 365973 913534 ~ 913794 (+) True G22625
TU25522 lncRNA upstream 383438 896121 ~ 896329 (+) True G22615
TU26152 lncRNA downstream 17438 1327563 ~ 1327875 (+) True G23175
TU26204 lncRNA downstream 35148 1345273 ~ 1345574 (+) True G23217
TU26210 lncRNA downstream 67934 1378059 ~ 1378355 (+) True G23223
TU26229 lncRNA downstream 176057 1486182 ~ 1486398 (+) True G23242
TU26231 lncRNA downstream 194424 1504549 ~ 1504981 (+) True G23244
CI01000003_01258265_01259530.mRNA mRNA upstream 20216 1258265 ~ 1259551 (+) True CI01000003_01258265_01259530
CI01000003_01140472_01168860.mRNA mRNA upstream 110867 1140342 ~ 1168900 (+) True CI01000003_01140472_01168860
CI01000003_01126525_01129929.mRNA mRNA upstream 149442 1126098 ~ 1130325 (+) True CI01000003_01126525_01129929
CI01000003_00981851_01059504.mRNA mRNA upstream 220263 981851 ~ 1059504 (+) True CI01000003_00981851_01059504
CI01000003_00842413_00868623.mRNA mRNA upstream 411104 842413 ~ 868663 (+) True CI01000003_00842413_00868623
CI01000003_01329453_01342093.mRNA mRNA downstream 19328 1329453 ~ 1342672 (+) True CI01000003_01329453_01342093
CI01000003_01356590_01360272.mRNA mRNA downstream 46352 1356477 ~ 1360348 (+) True CI01000003_01356590_01360272
CI01000003_01382733_01410162.mRNA mRNA downstream 72323 1382448 ~ 1410190 (+) True CI01000003_01382733_01410162
CI01000003_01430247_01451033.mRNA mRNA downstream 120122 1430247 ~ 1451626 (+) True CI01000003_01430247_01451033
CI01000003_01489211_01493471.mRNA mRNA downstream 177712 1487837 ~ 1494025 (+) True CI01000003_01489211_01493471
TU25485 other upstream 354519 924803 ~ 925248 (+) True G22578
TU25360 other upstream 884553 391013 ~ 395214 (+) True CI01000003_00390997_00406970
TU25282 other upstream 1090328 179531 ~ 189439 (+) True G22420
TU26311 other downstream 553143 1863892 ~ 1866921 (+) False G23315
TU26312 other downstream 553143 1864690 ~ 1866921 (+) True G23315
TU26310 other downstream 554483 1864608 ~ 1866921 (+) True G23315
TU26952 other downstream 970535 2280660 ~ 2285641 (+) True G23870

Expression Profile