RNA id: CI01000003_02551541_02556812.mRNA


Basic Information

Item Value
RNA id CI01000003_02551541_02556812.mRNA
length 558
RNA type mRNA
GC content 0.46
exon number 4
gene id CI01000003_02551541_02556812
representative True

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 2551541 ~ 2556836 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGCCGGTTCCACAGAGACCCGATGGCTGTCCACCAGGACTGGAGTACCTGACCCAGGATAACTTGGGACAGGAAGTGATGACACTCACACGCCCTTTGAAGTGTGGAAGCTGCTGCTTCCCCTGTTGCCTGCAAGAGCTTGAAATCCAGTCTCCACCAGGCAACCCGATTGGATATGTGATCCAGAATTGGCATCCTTTTATTCCAAAGTTTACCATTCAGAATGAGAAAAAGGAAGCTGTTCTGAAGATCGTGGGGCCATTCTGTTCCTGCAGATGCTGCGCTGATGTGAACTTTGACGTTTTGTCAATGGATGAGTCAACAAAGGTGGGCAGAATCTCTAAGCAATGGACAGGTCTGGTGAGAGAATCTTTCACTGATGCAGACAATTTTGGAATCTCCTTTCCTATGGATCTGGATGTGAAGATTAAAGCTGCTCTTTTTGGAGCATGTTTTCTCATAGTAAGCAAAAATGAGGCATTATCGTATGTCACCATATTCTTGTTAGACCCGTTTTCTAATCTTCCTCTATAGGCTCTGTTTGTTTCAGCGTAGTGA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27013 lncRNA upstream 50662 2500655 ~ 2500879 (+) True G23927
TU27011 lncRNA upstream 60481 2490723 ~ 2491060 (+) True G23925
TU27007 lncRNA upstream 72163 2479087 ~ 2479378 (+) True G23921
TU26999 lncRNA upstream 90442 2460834 ~ 2461099 (+) True G23913
TU26984 lncRNA upstream 94675 2455009 ~ 2456866 (+) True G23898
TU27136 lncRNA downstream 7073 2563909 ~ 2564426 (+) True G24032
TU27165 lncRNA downstream 58250 2615086 ~ 2615402 (+) True G24058
TU27191 lncRNA downstream 99027 2655863 ~ 2656066 (+) True G24083
TU27198 lncRNA downstream 105759 2662595 ~ 2662895 (+) True G24090
TU27201 lncRNA downstream 107308 2664144 ~ 2664443 (+) True G24093
CI01000003_02534151_02541110.mRNA mRNA upstream 10097 2534151 ~ 2541444 (+) True CI01000003_02534151_02541110
CI01000003_02510102_02514782.mRNA mRNA upstream 36572 2510102 ~ 2514969 (+) True CI01000003_02510102_02514782
CI01000003_02466819_02469433.mRNA mRNA upstream 81910 2466819 ~ 2469631 (+) True CI01000003_02466819_02469433
CI01000003_02422051_02446833.mRNA mRNA upstream 104704 2422051 ~ 2446837 (+) True CI01000003_02422051_02446833
CI01000003_02259112_02344710.mRNA mRNA upstream 206831 2259112 ~ 2344710 (+) True CI01000003_02259112_02344710
CI01000003_02781537_02783192.mRNA mRNA downstream 224597 2781433 ~ 2783270 (+) True CI01000003_02781537_02783192
TU26952 other upstream 265900 2280660 ~ 2285641 (+) True G23870
TU26311 other upstream 683404 1863892 ~ 1866921 (+) False G23315
TU26312 other upstream 683404 1864690 ~ 1866921 (+) True G23315
TU26310 other upstream 683404 1864608 ~ 1866921 (+) True G23315
TU25485 other upstream 1626293 924803 ~ 925248 (+) True G22578

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031889 True 1620 mRNA 0.39 10 NC_007113.7 8586953 ~ 8611675 (-)