RNA id: TU26018


Basic Information

Item Value
RNA id TU26018
length 420
lncRNA type read_through
GC content 0.36
exon number 2
gene id G23056
representative True

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 1176830 ~ 1222662 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGAACAATGCTAGGAAGATTGTTCCAGAGTTTAGGTGCCAAATAGGAGAAGGATCTACCACCTGCAGTTGATTTTGATATTCTAGGTATTACCAGCTGGCCTGAATTCTGAGATCGCAATAGACGTGAAGGACTATAATGAATTAGGAGCTCGCTCAGGTACTGGGGAGCTAAACCATTTAGTGCTTTGTAAGTAATTAGCAAGATTTTAAAATCTATACGATGTTTAACAGGAAGCCAATGCAGTGTTGACAGAACTGGGCTAATATGGTCATACTTCCTGGTTCTAGTAAGAACTCTAGCTGCTGCATTTTGTACGAGCTGTAGTTTATTTATCAGGCGAGCAGAACAACCACCCAGTAGAGCATTACAGTAATCTAGCCTTGAGGTCATGAACGCATGAACTAACTGTTCTGCATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25999 lncRNA upstream 106322 1070290 ~ 1070508 (+) True G23039
TU25548 lncRNA upstream 247683 928942 ~ 929147 (+) True G22641
TU25532 lncRNA upstream 263036 913534 ~ 913794 (+) True G22625
TU25522 lncRNA upstream 280501 896121 ~ 896329 (+) True G22615
TU25512 lncRNA upstream 293898 882605 ~ 882932 (+) True G22605
TU26152 lncRNA downstream 104901 1327563 ~ 1327875 (+) True G23175
TU26204 lncRNA downstream 122611 1345273 ~ 1345574 (+) True G23217
TU26210 lncRNA downstream 155397 1378059 ~ 1378355 (+) True G23223
TU26229 lncRNA downstream 263520 1486182 ~ 1486398 (+) True G23242
TU26231 lncRNA downstream 281887 1504549 ~ 1504981 (+) True G23244
CI01000003_01140472_01168860.mRNA mRNA upstream 7930 1140342 ~ 1168900 (+) True CI01000003_01140472_01168860
CI01000003_01126525_01129929.mRNA mRNA upstream 46505 1126098 ~ 1130325 (+) True CI01000003_01126525_01129929
CI01000003_00981851_01059504.mRNA mRNA upstream 117326 981851 ~ 1059504 (+) True CI01000003_00981851_01059504
CI01000003_00842413_00868623.mRNA mRNA upstream 308167 842413 ~ 868663 (+) True CI01000003_00842413_00868623
CI01000003_00747650_00802075.mRNA mRNA upstream 374149 746547 ~ 802681 (+) True CI01000003_00747650_00802075
CI01000003_01258265_01259530.mRNA mRNA downstream 35603 1258265 ~ 1259551 (+) True CI01000003_01258265_01259530
CI01000003_01280201_01309764.mRNA mRNA downstream 57105 1279767 ~ 1310125 (+) True CI01000003_01280201_01309764
CI01000003_01329453_01342093.mRNA mRNA downstream 106791 1329453 ~ 1342672 (+) True CI01000003_01329453_01342093
CI01000003_01356590_01360272.mRNA mRNA downstream 133815 1356477 ~ 1360348 (+) True CI01000003_01356590_01360272
CI01000003_01382733_01410162.mRNA mRNA downstream 159786 1382448 ~ 1410190 (+) True CI01000003_01382733_01410162
TU25485 other upstream 251582 924803 ~ 925248 (+) True G22578
TU25360 other upstream 781616 391013 ~ 395214 (+) True CI01000003_00390997_00406970
TU25282 other upstream 987391 179531 ~ 189439 (+) True G22420
TU26311 other downstream 640606 1863892 ~ 1866921 (+) False G23315
TU26312 other downstream 640606 1864690 ~ 1866921 (+) True G23315
TU26310 other downstream 641946 1864608 ~ 1866921 (+) True G23315
TU26952 other downstream 1057998 2280660 ~ 2285641 (+) True G23870

Expression Profile