RNA id: TU26829


Basic Information

Item Value
RNA id TU26829
length 257
lncRNA type intronic
GC content 0.36
exon number 1
gene id G23770
representative True

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 2139288 ~ 2139544 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGATCCTTGCCTGTTATTTGGACTGTGTTTGTTTGCCGCCTGCCCTGACCATTGCCTGTGACTTTACTCTGCTTGTCTGCCGCCTGCCTCGACCATTGCCTGTCCCTGTTTGTGTCTCTGCCTTTGCCCCTGTCTACTCTGTAAGTACTTTTAATAAACAAGCTGCAAATGGATCCTCACGCATTCGACCCATCATTACATCCTCAGTGTGAAAAGACGGATCTCAAAATCATTCAGTCACTGTTGTAAAGGGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26355 lncRNA upstream 91437 2029532 ~ 2047851 (+) True G23356
TU26384 lncRNA upstream 159695 1979029 ~ 1979593 (+) True G23383
TU26378 lncRNA upstream 185581 1953337 ~ 1953707 (+) True G23379
TU26322 lncRNA upstream 280074 1858488 ~ 1859214 (+) True G23323
TU26321 lncRNA upstream 281787 1855877 ~ 1857501 (+) True G23322
TU26830 lncRNA downstream 1 2139545 ~ 2139868 (+) True G23771
TU26861 lncRNA downstream 61150 2200694 ~ 2200936 (+) True G23787
TU26864 lncRNA downstream 67561 2207105 ~ 2207635 (+) True G23789
TU26953 lncRNA downstream 150802 2290346 ~ 2291021 (+) True G23871
TU26976 lncRNA downstream 314034 2453578 ~ 2454181 (+) True G23893
CI01000003_02070747_02072861.mRNA mRNA upstream 65899 2070747 ~ 2073389 (+) True CI01000003_02070747_02072861
CI01000003_01982406_01992219.mRNA mRNA upstream 146444 1982336 ~ 1992844 (+) True CI01000003_01982406_01992219
CI01000003_01969544_01973134.mRNA mRNA upstream 166154 1969330 ~ 1973134 (+) True CI01000003_01969544_01973134
CI01000003_01956459_01966449.mRNA mRNA upstream 172833 1956401 ~ 1966455 (+) True CI01000003_01956459_01966449
CI01000003_01921110_01928830.mRNA mRNA upstream 209667 1920837 ~ 1929621 (+) True CI01000003_01921110_01928830
CI01000003_02175343_02190917.mRNA mRNA downstream 35246 2174790 ~ 2193320 (+) True CI01000003_02175343_02190917
CI01000003_02259112_02344710.mRNA mRNA downstream 119568 2259112 ~ 2344710 (+) True CI01000003_02259112_02344710
CI01000003_02422051_02446833.mRNA mRNA downstream 282507 2422051 ~ 2446837 (+) True CI01000003_02422051_02446833
CI01000003_02466819_02469433.mRNA mRNA downstream 327275 2466819 ~ 2469631 (+) True CI01000003_02466819_02469433
CI01000003_02510102_02514782.mRNA mRNA downstream 370558 2510102 ~ 2514969 (+) True CI01000003_02510102_02514782
TU26311 other upstream 271151 1863892 ~ 1866921 (+) False G23315
TU26312 other upstream 271151 1864690 ~ 1866921 (+) True G23315
TU26310 other upstream 271151 1864608 ~ 1866921 (+) True G23315
TU25485 other upstream 1214040 924803 ~ 925248 (+) True G22578
TU25360 other upstream 1744074 391013 ~ 395214 (+) True CI01000003_00390997_00406970
TU26952 other downstream 141116 2280660 ~ 2285641 (+) True G23870

Expression Profile