RNA id: TU27514


Basic Information

Item Value
RNA id TU27514
length 2376
RNA type TUCP
GC content 0.38
exon number 3
gene id CI01000004_00467911_00469949
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 467802 ~ 471846 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTTGAGTGATCTCTGAGGACAGTCTAACGCTAACCCGACACACCTAAAGACTCCATTTGATCGGCAAATGACGACGGCAATGATGAAAGGATTTGTGCTGTCGATCTGCTTATTCTTCACAGTTGTTCAGTCCATCACTTGTGAAGCGAACAGGATAGAAGCGCGCAAAAAGCACGAAAACGACGTGGCGCACCACAGCTCTGCCATAACAACAGGAGTGTGGAATCAGGAGAAACCAAAAAGACTCTTTGCCAGGACTCGCTATCTGTCTCAGCAGAGACATCATGTGGTGAGACCTAAGCCCAGGCCTGAGGCCGTTTCTCCAGCCCAGACTCCAGCGCGGCGCTGTGCCGGTCTGATGGAGAGCTGCTCCTCGCTCACTCCCTGCTGTGATCCATGTGCTTCCTGCCACTGCAGGCTCTTCAACACCATCTGCCACTGCTGGAGACTGGGACACCTCTGCCCCAAGAAGACCTAATGACCTTAAACAAACACACACACACACACACACGCACACACGCACACACACGTATATATCGGTGGTTCTCGGTTGCTTTTACTTCAGCATTGCTCATCCAATACTGTTTATCAAACAAAAAGAAAGAAAACTCATTAAAATTGAGTTTAGACATTTAGTTTCTAAATATTTCTTGAAGTTTGATGGTATCTTGCTATCAGTTTCCAAAAATTCACCACACAAAACCAGTTTTCTTCATGGTTTTTGATGATGACGGCATCTGTATAATTTGACAAGCTTCTACCAAGATTAATTTGTGCCAAAATACTGAAGCGTTCGATTACAGCCTTTGACTTTTAAAGGTTAGTTCACCCAAAAATTTTAATTCTGTCATTAATTACTCACCCTCATGTCGTTCCACATCTGTAAGACCTTCGTTCATCTTCGGAACACAAAAAAAATAATGATAAAATGAAGCTTCATGAAGTTTTGAAGTTTTACGAATCTTTTGTTTCGAATCAGTGGTTCGGAGCATGTATTAAACTGCCAAAGTCACACCCCCCAGTGGTGAACCACTGAAATTTCAACACACATTTTACATAATGAAGCCTCGTTTACTGAAATCACGTGACTTTGACAGTTTGATACACACTCCAAACCACTGATTCAAAACAAAAGATTCATAAAACTTTGAAGCTTCATGAAGCAGTGTTTTGAAATCGCCCATCACTAGATGTTGTTGAATAGTCTTTTTTTTTTTTTTTTTTGCCGCACAAAAAGTATTCTCGTCGCTTCATAACATTAAGTTTGAACCACTGTAGTCACATGAACTGTTTTAAATACATCTTTAGTAGCTTTCTGGGCATTGAAAGTGTGAATTGTCTTGCTGGCAATGCAGGCCTCACTGAGCAATCGGATTTTATCAAAAATATCTTAATTTGTGTTCTGAAGATGAATGAAGGTCTTACGGATGTGGAACGACATGAGGGTGAGTTATTAATGATAGAGTTTTAATTTTTGGGTGAACTAACCCTTTAAAGGAATATTCCATTTTCAATACAACTTGCATAAAGTTGATCACCACAAAAATGATTTTGACTCGTCCCTCGTTTCCTTTAAAACAAGCAGAAATAGAGGTTTCAGTGAGGTTAATTTTATTGTTTTGCTCATTATTAGTTAACGTTAATTAATGCAATAACTAATATTAATAGGACTTTACTGTAAAGTGTTACCAGCGTTTTTTGTATTTTTTATTTAGCATTTAGCAAATGTTTGTTCAGAACAGACCTCCAGATCCACCATAAGAGAACCACAGCTATATATCACACAAGTAGCTGTGCACCATCAGGATTTACACCTGTACTTCTACACACTCTGATTCTACTATGTAGCATGCCATGGATCATACATGACATTTAACTGACTGTACAGTGAATATTTAACTACCACATGACTCGAGTTCTTTGCTCTCTATTTGCATCATGATGACACTATGTGACTGCTTTGCCAACTGGAGATGTTAGTACAGTGAACTCTTGTAGGATTCTTGCTGGCAAAGTTTCATTTTTGTGATTATTCTCAATATTTTTCAGCTCTTGTTAAGCAAGGGGCATATCTAACAGTGTAACCGTGCCTAAAAAGCTAAGTTAAGTAATTTTAGGTGCAGTAAATGTGAAACTAATGTTATCCTCATACTGTGATCTTAATAATAAGTTTTAAGATGTTCATCTACTGTGATGATTCCACTGTCATATGGCATTTTTTCATGTTTCTGATTTCTACATGAAAAAAAAAAAAGTATACGTGAATGTCAAGCAGACACTTTACTGTGGATGAAAAGCTTCTTAAAGAAAAGTTGCCAGATAACTATCATCATATGTTTCTATCCACTGTCAGGTCATATTGACTGAATATTATT

Function

GO:

id name namespace
GO:0009755 hormone-mediated signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27492 lncRNA upstream 40933 426709 ~ 426910 (+) True G24359
TU27491 lncRNA upstream 43356 424271 ~ 424487 (+) True G24358
TU27420 lncRNA upstream 89732 377110 ~ 378111 (+) True G24292
TU27480 lncRNA upstream 111446 356102 ~ 356397 (+) True G24347
TU27421 lncRNA upstream 123162 340135 ~ 344681 (+) True G24293
TU27584 lncRNA downstream 37036 508882 ~ 511729 (+) True G24426
TU27589 lncRNA downstream 45031 516877 ~ 519291 (+) True G24431
TU27568 lncRNA downstream 249669 721515 ~ 722125 (+) True G24410
TU27571 lncRNA downstream 250544 722390 ~ 722637 (+) True G24413
TU27670 lncRNA downstream 279192 751038 ~ 753326 (+) True G24509
CI01000004_00407881_00409797.mRNA mRNA upstream 57704 407881 ~ 410139 (+) True CI01000004_00407881_00409797
CI01000004_00318181_00339002.mRNA mRNA upstream 127823 317234 ~ 340020 (+) True CI01000004_00318181_00339002
CI01000004_00311036_00314134.mRNA mRNA upstream 153709 309804 ~ 314134 (+) True CI01000004_00311036_00314134
CI01000004_00291677_00292816.mRNA mRNA upstream 175017 291342 ~ 292826 (+) True CI01000004_00291677_00292816
CI01000004_00266091_00278846.mRNA mRNA upstream 188997 266091 ~ 278846 (+) True CI01000004_00266091_00278846
CI01000004_00544278_00547753.mRNA mRNA downstream 71087 542933 ~ 547983 (+) True CI01000004_00544278_00547753
CI01000004_00584081_00605137.mRNA mRNA downstream 112235 584081 ~ 605802 (+) True CI01000004_00584081_00605137
CI01000004_00617015_00621040.mRNA mRNA downstream 145169 617015 ~ 621258 (+) True CI01000004_00617015_00621040
CI01000004_00630734_00632040.mRNA mRNA downstream 158783 630629 ~ 632205 (+) True CI01000004_00630734_00632040
CI01000004_00664431_00666004.mRNA mRNA downstream 192585 664431 ~ 667351 (+) True CI01000004_00664431_00666004
TU28378 other downstream 860619 1332465 ~ 1333989 (+) False CI01000004_01332533_01345585
TU28341 other downstream 869562 1347470 ~ 1348174 (+) True G25120
TU28416 other downstream 1132696 1604542 ~ 1616470 (+) True G25187
TU28515 other downstream 1392313 1864159 ~ 1873358 (+) True G25282
TU28564 other downstream 1611211 2083057 ~ 2085707 (+) True G25329

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031862 True 5107 mRNA 0.38 3 NC_007113.7 7419986 ~ 7431590 (-)
rainbow trout (Oncorhynchus mykiss) TU2434163 False 610 TUCP 0.48 4 NC_048592.1 32062049 ~ 32165022 (-)