RNA id: CI01000004_00711100_00720189.mRNA



Basic Information


Item Value
RNA id CI01000004_00711100_00720189.mRNA
length 1848
RNA type mRNA
GC content 0.49
exon number 9
gene id CI01000004_00711100_00720189
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 711100 ~ 720716 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GATATTTGTGAGATCTCCTGCGTTTATCATCTCTGTGAGAGTCTTGGGCAATCATGGCGGCGATGACACCAGCGCGGAGTTCTCTGAGAATACTGAGACGGCTGTGGCCTCTGGACAGGTGCTGCAGTTCAAACTCTCAGATATTGGAGAGGGCATAATGGAAGTGACAGTAAAAGAGTGGTATGTCAAGGAAGGGGACAGGGTCTCCCAGTTTGACAGCATTTGTGAGGTCCAGAGTGACAAAGCGTCCGTCACTATCACGAGCCGCTATGATGGCGTCATCCGTAAGCTGTACTATGACGTAGATGCTATCGCACATGTTGGTTCACCTCTTGTGGACATCGAAACGGACAAAGCACTGGAGGGCGCCCCAGAGGAAGATGTGGTAGAGACTCCAGCAATATCCCATAAGCAACCACATCGAGAAATCAAGGACCAAAAAACCCAGGCGACACCAGCAGTACGGCGTCTGGCTATGGAGAACAATATTAAACTAAGTGAGGTGGTCGGGACAGGAAAAGATGGCCGTATTTTAAAAGAGGACATTATTAGTTTCTTAGCCAAGCAGACAGGAGCCATCCTCCCTTATGAGGTTGAGAAAACCCCAACACCCGTGATTTCCACTTCAAATACCCCACCCAAAGAGAAGACGCCCATCATGGCACCTCCGACGATCCCACTACCCATCTTCTCTGGCAAAGACAGGACAGAGCCTCTGAATGGTTTCCAGAAGGCCATGGTGAAGACCATGACTGCTGCTCTGAAAATTCCTCACTTCGGTTACTGTGACCAGGTCGACCTGACGCAGCTAGTGCGGTTACGTTCGGAACTGAAGGACCTGGCGAAATCTCGGGGTGTCAAACTCAGCTACATGCCTTTCTTCATCAAGGCATCTCATAACATCGGCCTGGCGATGGACACTCCTCAGGGCCTCCTGGTGCCCAATGTGAAGAGCGTTCAGGCCCTCAGTGTTTTTGACATAGCTGTGGAGCTCAACCGTCTGCAGGCTCTGGGTTCAGCTGGACAGCTAGGCACCGCTGATCTCACTGGAGGAACTTTCACCCTCTCCAACATTGGCTCGATTGGAGGGACGTATGCCAAGCCAGTGATTCTGCCCCCGGAGGTGGCCATCGGAGCTTTGGGAAAGATCCAGGTTCTGCCTAGGTTTAACTCCCGTGATGAGATAGTAAAGGCGTACATCATGAATGTCAGCTGGTCCGCCGATCATCGCGTCATAGACGGGGCCACTATGTCCCGCTTCTCCAACCTGTGGCGGTCTTACCTGGAGAACCCAGCTTCCATGGTCCTGGATCTCAAATGAACACTGCTCTGGAAATGAGATCTCTGTTGTCCATTACTTCCTGGAGTGTCTTTAGGTTACTTACAGCTTCAAAACAGTGTGCCGTGACTCACATGAACACTCAAGTTTCTGCTTTCACATTCATTTGTGGGGAAAAGAAAAAAAAGACTTCAGTTCCTTTTCTCTATTTGCCTTATTTCAGATTAAAGACTGTTACTGCAACTTTACATCACAGAACACTTGCCTCATGTTAATGAGTTTTTGAGGACCGGGACACCTGAAATCACCTCTAAGTTTTCCTAATGCACAAAGCTTGTGTGTGGGAGACAGAGGCTGATACTGGCTGGCTCTTGGACAAGCATCGGGACTGTAACATCTCATTGTTTGCTGACTTTCTCTGAGACTTCATTCACACAAGCCTCTGTAGAGTGGACAGACAGCCACTTCATCTAAAACCACTTGTGTGTCAGTGTGAAGAAAGGACCATCATTTAACTGTTAAAAGAACAAATGGACCACACATGGACAGATTACTAAAATGTGATAGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU27589 lncRNA upstream 191809 516877 ~ 519291 (+) True G24431
TU27584 lncRNA upstream 199371 508882 ~ 511729 (+) True G24426
TU27492 lncRNA upstream 284190 426709 ~ 426910 (+) True G24359
TU27491 lncRNA upstream 286613 424271 ~ 424487 (+) True G24358
TU27420 lncRNA upstream 332989 377110 ~ 378111 (+) True G24292
TU27568 lncRNA downstream 799 721515 ~ 722125 (+) True G24410
TU27571 lncRNA downstream 1674 722390 ~ 722637 (+) True G24413
TU27670 lncRNA downstream 30322 751038 ~ 753326 (+) True G24509
TU27576 lncRNA downstream 35614 756330 ~ 756931 (+) True G24418
TU27696 lncRNA downstream 80638 801354 ~ 802056 (+) True G24534
CI01000004_00664431_00666004.mRNA mRNA upstream 43749 664431 ~ 667351 (+) True CI01000004_00664431_00666004
CI01000004_00630734_00632040.mRNA mRNA upstream 78895 630629 ~ 632205 (+) True CI01000004_00630734_00632040
CI01000004_00617015_00621040.mRNA mRNA upstream 89842 617015 ~ 621258 (+) True CI01000004_00617015_00621040
CI01000004_00584081_00605137.mRNA mRNA upstream 105298 584081 ~ 605802 (+) True CI01000004_00584081_00605137
CI01000004_00544278_00547753.mRNA mRNA upstream 163117 542933 ~ 547983 (+) True CI01000004_00544278_00547753
CI01000004_01002230_01003932.mRNA mRNA downstream 281302 1002018 ~ 1003982 (+) True CI01000004_01002230_01003932
CI01000004_01069526_01076799.mRNA mRNA downstream 348810 1069526 ~ 1077028 (+) True CI01000004_01069526_01076799
CI01000004_01094661_01097428.mRNA mRNA downstream 373945 1094661 ~ 1097658 (+) True CI01000004_01094661_01097428
CI01000004_01113222_01149263.mRNA mRNA downstream 392366 1113082 ~ 1149991 (+) True CI01000004_01113222_01149263
CI01000004_01167271_01194834.mRNA mRNA downstream 445223 1165939 ~ 1195104 (+) True CI01000004_01167271_01194834
TU27514 other upstream 239254 467843 ~ 471846 (+) True CI01000004_00467911_00469949
TU28378 other downstream 611749 1332465 ~ 1333989 (+) False CI01000004_01332533_01345585
TU28341 other downstream 620692 1347470 ~ 1348174 (+) True G25120
TU28416 other downstream 883826 1604542 ~ 1616470 (+) True G25187
TU28515 other downstream 1143443 1864159 ~ 1873358 (+) True G25282
TU28564 other downstream 1362341 2083057 ~ 2085707 (+) True G25329

Expression Profile