RNA id: CI01000004_01167271_01194834.mRNA


Basic Information

Item Value
RNA id CI01000004_01167271_01194834.mRNA
length 4758
RNA type mRNA
GC content 0.44
exon number 25
gene id CI01000004_01167271_01194834
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1165939 ~ 1195104 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATAAAAGCGGATAATGGTTTTCTGTGGTTATGTCACATTTCCTTTATAGTGGTTTCACTGTCTTGCCCTGCATCCCAGTGTGCAGACTTTCCGCCCTAAATCGTATTGAATATTACTAATGTCACATACTATTTAAGATGGATAGTATGCACATTGAGAGGCAGGCTTGTTTTTTTTTTTCAGACCTTGATCAGTTTTGCCGGGTCTATGGAAAGGAACGCTCAATGACCAATCAAAACTAGACTAATACCAAAACATGCCACATCCCGTGTTATGCTTTATCAGCTTTCCTTATTTGTCTTCATACTGTATAAAGCAAGTAACTGCATTAAACTACACTACACATACACTATTTTACCTGTAAATCTGCCATGTTGTAATCAAAACTACAGTTAACTTGTCAGTTCCCATAAAAATTACATCCATCCTACAAGTTCTGACTTGGCAGTTGGTCAAAGATTCTTAAAGGGTTAGTTCAACCAAAAATGATAATTGTGTAATCAGTTTAACTTCATGCTGTTCCAAAGATATTTTTAATTAAATCTGAGAGATTTTTGTCCCTCCATTAGCCATGTTTCCATCCAACTATTTTTATATGATTTTTGGGATGTCGCATAAAACATGTTGGATGTAATGCCAAGATGCGCATGAATTCCTAAAATGCACCTATAAAACGTATTCGCTCAGTTGAGGCGGATAATTTTTTTTATCCAATAAGAAACTACGATGGGGAAACATTTACTCAATAAATAAATCCCTTGATGTGTAACAAAAAAAACTCAAATGACTGCCTCAGCAGATGATGTTATTTGATAACTGGACTAACCAGCGGAGCAATTTCATTGCACAGCATTTCAGATGTTGGTTTAGTTATTCTGAAATGCCTGAGCCAAAGTCTGCCATCAAAATGATTTGGTATAATGAACTCCCAGAAATGTCTCACATGATTGCTTTCCCAAACACCAGGTATATACACGCAAGATAACATGACAGTGTTTAGTGCGTTTCGTCTGTGCGCTCTGAGACGCAAGTCATTTATGATGTAGAATAGCCACTGGCTTCCCTAACTGCAGCAACTTCCATTTTTATTACAGATATTTTGGCCCAATTTCCCAGGAAGTGAACACATATTCGCAAATGGTTTATGCAATATTCCTATTTTACACATAAGTTAAATTCGCAACTTTGGATGAAAACATAGTTACTGAAAGTCTTTTGTCCCAAAGCTCTGACGCATGATATGGAAGTATGGAAGTTATGACAATAAAGTTAGTATTTGACTGTGTGTTTATTGTGAATGATGAATGCTTGATGTGTGTAGAGGAAGAGCATGTCGAAGAGGAAGAGCAGTAATTCAGGACTCACTCCTGATAAGAGAAGCCGGTTATCTCAACCCGAACCCGAGGAGGAAGAGGAATTGGGCTTCTTCAGTTCAGGAGATGGCAAAAACTCATCACAGAGTGTCACAGGTGAGGTGGGCATCATAGAGAGTATCTCTCTAAAGAACTTCATGTGTCATTCGTTGCTTGGTCCCTTTGAGTTTGGTCCAAACGTCAACTTTGTCGTAGGAAACAATGGAAGTGGGAAAAGTGCAGTGCTAACTGCTCTGATTGTGGCCCTGGGTGGTAAGGCTCACACCACCAACAGAGGCTCCTCACTCAAAGGATTTGTTAAGGAAGGAGAGAGCTCTGCAGACGTGTCCATCACTCTGAAGAACAGGGGTCGTGATGCGTATAAACCAGAAGTTTTTGGCAAATCCATCATCGTAGATCTTCGTATCTCCAGCGAGGGACTGCGGACTTATAAACTAAGAAGTAAAACAGGTCACCTAGTGTCATCCAAAAAGGAAGAACTGATCTCTATTTTGGATCACTTTAACATCCAGGTGGACAATCCGGTCTCTATCCTTACCCAGGAAATGAGTAAACACTTTCTTCATTCCAAAGGAGAGGGGGACAAATACAAAACTCTACAAGAACTAAAGAGAAAGTACCACGAGAAAGAAGAGCGCTATAAAAACCTGGCTTCACTCGATGAAATGCAGCAGAAGTTGGATTTGCTGAAGAATCAGATGGCCTGGGCTCTGGTGGCAGAGTTGGAGCAGGGAGTGAAGCCCATGAGAGAACGAATCACAGCTGAAGAGAAATCCACCGTCAAATATGACCAGAAGGTGGAAGAGTGGGAGGGGAAAGTTCAGGAGGCCAACAGAATATCCCAACAGTTGCAGGATCAGCTGGAGGGTGTGACAGAGCGGATGCAGCAGCTGCAGCCACGTTGTGCTGAACTAAAGAGCCGAGCACAGGAGCGCAACCGAGATCTCAAAGCAGCCGAGGCTGGACTTCATCGGAAAAAAACGAACTTAAGAGACCTTCAGAAGGATAAAGATCAGCTCAACAAGCGTATCCAAGAACTTAAACAGAGCATAAGTCAGGCGAACTCAGCTGACACACAGGCTCGTGTGGAGAAGATGAATCACATTCAGGCTGAGCTGGAAGATCTGAGTTTCCAGGACTCCACTCTGGCTCAGCAGATCGATCAGTTTAAACAGGCCTGTGCCGCTGCTAAAGAAAGGCTGAGTAGAATGAGCCGTGATAAGCAGAACCTGCTGCATGCGATGGCGTCTAAGCAACGAGATCTGGCTGCTATGGAAAAGAGTCGAAATAACCAAATTTGTCGTTTTGGTGAGCAAATGCCGGGACTGCTGAGGGCTATAGATGAGGCTGACCGGCAGGGTCAGTTCAAGAGGAAACCTGTTGGACCACTTGGATTCTGCATCCGACTGCGGGATTCGGAGCTGGGTCTTGCAGTGGAGAGCTGTCTGAAGTCTCTGATGTTAGCTTTCTGTTGCGATAACCACGCTGATGAGAGAGAGTTACAGAGAATCATGAGTCACTGCTTCCAGCATGGCAGAAGACCTCAGATCATCGTCAGCACATTTACCAACACACTCTACAATGTCAGCAGCAGGGCTGCCAATCACCCTCAATACCCAACAGTGCTCCAGGCCCTTGACATTGAGAATCCAGTTGTGGCCAACTGCCTGATAGACATGAGAGGAATTGAAACCATTCTGCTCATCAAGAACTCTGCAGAAGCGAGAAGGGTCATGCAGGGTGGACACCCACCACGCAATTGCAGGGAGGCCTTCACATGTGAGGGGGACCAGGTCTACAATAACCGTTACTACTCTTGCGACCAGAACCGAGCGCAGTACCTCACTAAAGATGTTGAAGAGGAAATCAGACATTTGCAGTCTGCCTTACATTCCCAGAGAGCACAATTGGATCGCTTTCAGCAGGACGTGCAGCAGATTAATGAGGACTTAAAACAGAACCAAATTCTTCTTTGCAGAGCCTATGAAGACCAAAAGAAGGCCCAGGAACGTTGTCGGAAGCTTCAGGCAGAGCTGACGGAATTGCAGAATGTTGAGGAACCACAGTCAGAGGACTTGAAACCTTTGGAGGAGGAACTGGAGGAGCTCAGCAGCCGGATAAGTGCATGTCAAGTGGAATTTGAAGCTGCGCGGAAGCAGACGCAGACACACAAGAGGGAATGTGAGGAGGCCGAGCAGCTCTACCGGCAGGAGAGGGAAGCTTTTAACAGCATCGCAGAGGAAGCTGAGCCCATTAAGGAGCAGATGAGCAACAGCGATCAGGAGGTGGCGAGGAGTAAACACCACAAAAAACACTATGAAGACAAACGCAAAATTCACGTGGAAATGATTGAGACACTAAAGAGGGACCTGAATGTGAAGGAGCAGGAGTTACAGGCTTCCATTGCAAAAGCCTCAGAAATCTGCCCCGAGCGTTTGGATGTGAGGAGGACTGCGAAGAGTTTGGACAGTGAAATCAGCCGCCTCAGACACAAGATCAACACGCAGCAGGACCAACAAGGACACAGAGACACTATTGTCAGGCAGTACCATGAGGCAAAGGAAAACTTCAATAACGTAGCCCGACAAGTAAAGGGTTTGGAGGCTTTCATCCGCCAGTTGTCCGAGATCATGAACACCAGACACTATGTCTACGCTGAAATGAGAATGTATCTTTCTGTACGCTGTAAGTACTACTTCGATTCCATGCTTTCTCAGAGAGGGTACATAGGGAAGATGACTTTTGACCACAAAAATGAGACTCTGTCCATATCAGTTCAGCCAGGAGAGGGTGGTAAGGCTGCTCTGAGTGACATGCGCTCACTGTCTGGAGGAGAGCGTTCGTTTTCTACCGTGTGCTTCGTCCTGTCGCTGTGGGCCATAGCAGAAGCTCCGTTCCGGGCCTTGGACGAATTTGATGACATGGTGAACAGGAGAATTTCGATGGACATGATGTTGAAGATCGCTGCAAGCCAGCGCTACAGACAATTTATTTTCCTCACACCACAGAGCATGAGTTCTCTTCCGATAAACAACATGATTCGTATCCTACGTCTCAACGACCCTGACCGTAGCCAGTCAACTCTTTCTTTCGGTCAAAGGGACCCAGAATAATGCTGCTGTCCTCTGAACTGTGGTTTACACCTCTGCACTTTATAGTTCTCTATCTTTACTTTATAGTTCTCTATAAATGTTTACATTTTTTATTTTTTTCCAAAGATGTCATTTAAAAGTATGTACATTTATAAACGAATGTAGTTATTTAATACCAAAATTTGCAGGTCTCGTTTTGTTCTGCACTTTAAATTTTTCTAAAAAAAAATAGTTTTTAAGTTTTATAATACGAACGTGATTACAATGTTATTTGCATTGAAACTCGGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28296 lncRNA upstream 5509 1140627 ~ 1160430 (+) True G25076
TU28310 lncRNA upstream 33362 1132293 ~ 1132577 (+) True G25089
TU28260 lncRNA upstream 59015 1106696 ~ 1106924 (+) True G25044
TU27688 lncRNA upstream 84405 1080811 ~ 1081534 (+) True G24526
TU27808 lncRNA upstream 101787 1063697 ~ 1064152 (+) True G24641
TU28283 lncRNA downstream 36631 1231735 ~ 1231938 (+) True G25063
TU28351 lncRNA downstream 95118 1290222 ~ 1290678 (+) True G25129
TU28366 lncRNA downstream 115939 1311043 ~ 1311591 (+) True G25143
TU28452 lncRNA downstream 249961 1445065 ~ 1445396 (+) True G25222
TU28431 lncRNA downstream 264229 1465948 ~ 1489877 (+) True G25201
CI01000004_01113222_01149263.mRNA mRNA upstream 15948 1113082 ~ 1149991 (+) True CI01000004_01113222_01149263
CI01000004_01094661_01097428.mRNA mRNA upstream 68281 1094661 ~ 1097658 (+) True CI01000004_01094661_01097428
CI01000004_01069526_01076799.mRNA mRNA upstream 88911 1069526 ~ 1077028 (+) True CI01000004_01069526_01076799
CI01000004_01002230_01003932.mRNA mRNA upstream 161957 1002018 ~ 1003982 (+) True CI01000004_01002230_01003932
CI01000004_00711100_00720189.mRNA mRNA upstream 445223 711100 ~ 720716 (+) True CI01000004_00711100_00720189
CI01000004_01210703_01220270.mRNA mRNA downstream 15350 1210454 ~ 1220283 (+) True CI01000004_01210703_01220270
CI01000004_01228506_01230204.mRNA mRNA downstream 33301 1228405 ~ 1230414 (+) True CI01000004_01228506_01230204
CI01000004_01237895_01247463.mRNA mRNA downstream 41264 1236368 ~ 1247463 (+) False CI01000004_01237895_01247463
CI01000004_01263941_01279547.mRNA mRNA downstream 68837 1263941 ~ 1279758 (+) True CI01000004_01263941_01279547
CI01000004_01302094_01304391.mRNA mRNA downstream 106045 1301149 ~ 1304664 (+) True CI01000004_01302094_01304391
TU27514 other upstream 694093 467843 ~ 471846 (+) True CI01000004_00467911_00469949
TU28378 other downstream 137361 1332465 ~ 1333989 (+) False CI01000004_01332533_01345585
TU28341 other downstream 146304 1347470 ~ 1348174 (+) True G25120
TU28416 other downstream 409438 1604542 ~ 1616470 (+) True G25187
TU28515 other downstream 669055 1864159 ~ 1873358 (+) True G25282
TU28564 other downstream 887953 2083057 ~ 2085707 (+) True G25329

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031846 True 4267 mRNA 0.45 26 NC_007113.7 6321623 ~ 6373829 (-)