RNA id: CI01000004_01800502_01807872.mRNA


Basic Information

Item Value
RNA id CI01000004_01800502_01807872.mRNA
length 2716
RNA type mRNA
GC content 0.45
exon number 9
gene id CI01000004_01800502_01807872
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1800502 ~ 1808852 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGTTGAGTCCACTGGTAAAATTCCGAGAATTGAGAACTGCGTCTTCTCAGAAGAGTTCTTCCAAGAACTGTCTTCGGTGGACACTTCCAAGAAAAATACACCAGTTGCATTAGATTCAGTGATGTTAACTAACGTTAGATTTAGGAAGCTCACTCAGAATTGTATAAAAAAGACAGGTTTACGCAACTTTATATGGGTGAACAATATGTCAAGTGCAGCAGACGGCTGCGTTAAATTCACTCGCCATGCCGGTGATGTGCTGTTCAACTTCAACCGCCTACGCAGCAGAAACATCCTGACTGATGTCACCATTATGGTCGGTGGGCAGCAATTTCAAGCCCACAAGACAGTTCTGATGGCATGCAGCGGCCTCTTCTACTCCATGTTTGCTGACACTCATAAGAGCAACTTGAGCTTCATAAGTTTAGATCCAAAGGTGGACCCCGATGGCTTCGCCATACTGCTGGAGTTCATGTATACGTCTTGCCTCACTCTTAAAGATAACTTCATTATAGCCACCCTCAACACAGCCACATACTTACAGATGGACCATGTGATGGACACATGCCAGAGGTTCATAGACTCCAGAGATGCCCTGAACAGCCAATCCAGTGTTAACTTTAGCACTTACGGTCCTCCCAACCTGCACTATGCAGTCAGCACTTCCACCGAAAGCCCGACTCGCTTCTACAGACATCTGCCACTCCCGCTGGAGACCTCCAACACCACAAACCCAATCTGGCAGATCCCTAAGACCGGCGTAATAGCCCGTCAACAGCACTCCCTGCCAGACAGCGGAGGCTCGGCTAGGACGATGACTAACGCAGGAGCCACGGAATCCAAAGAAGAGAGGAAACGTCCATCTGTGCTCTTTCGTTCAGCTCGAGCTGAGGGAGACCGGAAGGCTGCGAATGTGCATTCAGAGGTGGAGAACACTGAACCGTGTCACACCAGTGGTCCCGAGAGCCCTCTTAGATCAGACTGCCAACCCAACTCACCCGCAGAGTCCAGCAGCTGCAGTCGAGGGGCGGCGTCTCCTCCCAGCTTCATCAGTCACCCAAAGGTCCACAACTGGAAGAAGTACAAGTTCATTGTGCTGAACTCCACAGATGGAGCGACTGACAATAGCTCACTAACTCCATCCCACATAGTTACAGAATCCACCAACAAGAGCAATGAAGGCAGAGGGCAGCTCATTATGGATAGCAGATCTGCAGATGATTGCATCAAAAAAGAGGCGCGTGGCTCTTCACTTCCTAACTCTTTGACAGAGGAGAGCAGTATGGGACCCACAAGATCAGAGAGGGACAGACTCTACTGTAACGAGTGCGAGTCCAAGAGTGAATCTGATGCAGAAAAGCCTCAGTGGCTGCAGGATGGAAAACCATACAAATGTGACCGTTGCCAAGCCATGTTCCGCTATAAAGGAAACCTAGCTAGCCACAAGTCCGTCCACACAGGAGAGAAACCGTACCGTTGCAACGTATGTGGAGCTCAGTTCAACAGGCCTGCCAATCTGAAGACACACTCACGGATCCACTCAGGAGAAAAACCATACAAATGTGAAACCTGCGGCTCTCGCTTTGTCCAGTGTGAGAATTGTGACCTGCACTTCCGTCACAAGAGTCAGCTGCGTCTGCATCTGCGACAGAAGCATGGTGCCATCACAAACACCAAGGTCCAGTACCGCAGAAGCAGAGCAGACCTGCCTGTCAGCTCCCTCGTGACTTCTTGAAAAACCTGAAGCTGTTCAGAGACTCAACAAAAACCTTTTCAAGTAAAGATATGGTGAAGGAGACATGATCATTTACTGGTACTGCCACAAGAAAAGCCATCAGGAAATACAGATGCCCGCATGGATCTTTGTGTCGCCATTGTCCGTGTTTACTCATATGGTGAAGTTACATATTATTTCTGAAATATGCACAGCAAAATCCCCAGAGTTAAATCAACTTTGCTCAGAGAACATATGGTTCCTCCCTACATAGAGTTAAAATAACACTGAAGCAGAGTTAAAGTTAATGAGAAAATGTGCTGTTTGTGGAGTTGTTTAATCAGATCTTGAGGGATTTAATGTCTTCTATCTTCAGTTGATTTCATCTAAGGCTGTGGCTGGAAGTCATTTGTAGTTATTGTGTTTCTCTTCAGTGATTCTGCTTGTTAACAGCAGGTGTTCATCACTAATGCTCAATCATAACTTAATTAATCTCATTAACTTTAACTCTGCTTCAGTGTTACTTTAGCACTATATAGAGAGGGACCATATGCAATCTGAGCAGAGTTGATTTAACTCTGGGGATTTTGCTGTGTGAAGGACTAGTGCACCAGCACATTCTGGTTCACCCTTCATGATTTCAGCTGGGTATCGTGGTGGCTTAAGATTTTAATAATAATATAAACAAAGACTTTCAAGCATTGTTACTTAAGTTCTTGTCAATACAGACTGCAAATTCTTAGTGTAAGATTAGATATTTGAACATAATTTTATCTCTATTTATTTTTTTAGAATGCTATTTCACTCCCTCTCCAGGCAAACTATGCACTGTATATAATATACAAGGGGAAAATTGGTACAGAAAGAATTCTGCAATTGCAATGTAAATGTTCTACCAATGTGGTACATTTAAAGAAGCCCTGCTCTGTCTGACAATTGTATTGTATTTACATGTGTTTGTACAGTTGTTTTTGGTACTAGAGGGCCAAATGTCCTTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28484 lncRNA upstream 29798 1770395 ~ 1770704 (+) True G25254
TU28483 lncRNA upstream 30325 1769825 ~ 1770177 (+) True G25253
TU28478 lncRNA upstream 38239 1760530 ~ 1762263 (+) True G25248
TU28479 lncRNA upstream 41280 1757912 ~ 1759222 (+) True G25249
TU28472 lncRNA upstream 95944 1704257 ~ 1704558 (+) True G25242
TU28572 lncRNA downstream 137074 1945926 ~ 1950133 (+) True G25337
TU28579 lncRNA downstream 146533 1955385 ~ 1955605 (+) True G25344
TU28580 lncRNA downstream 147290 1956142 ~ 1956492 (+) True G25345
TU28559 lncRNA downstream 147790 1956642 ~ 1957261 (+) True G25324
TU28540 lncRNA downstream 149801 1958653 ~ 1959840 (+) True G25305
CI01000004_01757017_01757201.mRNA mRNA upstream 42638 1757017 ~ 1757864 (+) False CI01000004_01757017_01757201
CI01000004_01750322_01754593.mRNA mRNA upstream 45179 1750322 ~ 1755323 (+) True CI01000004_01750322_01754593
CI01000004_01715623_01744133.mRNA mRNA upstream 56369 1715623 ~ 1744133 (+) True CI01000004_01715623_01744133
CI01000004_01670419_01699238.mRNA mRNA upstream 101264 1670419 ~ 1699238 (+) True CI01000004_01670419_01699238
CI01000004_01623427_01625278.mRNA mRNA upstream 175162 1623427 ~ 1625340 (+) True CI01000004_01623427_01625278
CI01000004_01823571_01825813.mRNA mRNA downstream 14719 1823571 ~ 1826766 (+) True CI01000004_01823571_01825813
CI01000004_01855598_01856473.mRNA mRNA downstream 46499 1855351 ~ 1856524 (+) True CI01000004_01855598_01856473
CI01000004_01867166_01868986.mRNA mRNA downstream 58314 1867166 ~ 1868986 (+) False CI01000004_01867166_01868986
CI01000004_01883020_01908403.mRNA mRNA downstream 74168 1883020 ~ 1908634 (+) True CI01000004_01883020_01908403
CI01000004_01917089_01920203.mRNA mRNA downstream 106774 1915626 ~ 1920705 (+) True CI01000004_01917089_01920203
TU28416 other upstream 184032 1604542 ~ 1616470 (+) True G25187
TU28341 other upstream 452328 1347470 ~ 1348174 (+) True G25120
TU28378 other upstream 466513 1332465 ~ 1333989 (+) False CI01000004_01332533_01345585
TU27514 other upstream 1328656 467843 ~ 471846 (+) True CI01000004_00467911_00469949
TU28515 other downstream 55307 1864159 ~ 1873358 (+) True G25282
TU28564 other downstream 274205 2083057 ~ 2085707 (+) True G25329
TU29214 other downstream 739223 2548075 ~ 2573049 (+) True G25882
TU29329 other downstream 927684 2736536 ~ 2736768 (+) True G25992
TU29335 other downstream 949604 2758456 ~ 2758938 (+) True CI01000004_02745885_02768971

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031934 True 2312 mRNA 0.47 9 NC_007113.7 10087334 ~ 10098191 (-)