RNA id: CI01000004_03324524_03348961.mRNA


Basic Information

Item Value
RNA id CI01000004_03324524_03348961.mRNA
length 4388
RNA type mRNA
GC content 0.51
exon number 27
gene id CI01000004_03324524_03348961
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3324524 ~ 3349113 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTTCAAAGACAACAGAGGGTTGGTAGAGGATGTTGTCTCCTTGAGGAATCAGCTGCGATTAACAGAGAAAAACTTACAATCAGTGGGAGAACAACTGAGTCAATCAGGAAATGACATCGTTGGTGAGGATAAAAACAGGAGTGCCGTGGATGAATTCCCTGGTCGTCTTACATTAGAGGACCTTCAGAAGCCTGATCCTGGACAACCGAGAGGAGTAAATTTCCACACTGAGCAGAAGGCATATGCACATATATCTACCTGTGACTGCAGGTCAGACAGAGACATGGACACCGAGACGTCTGTTCTCAGGAGGAAGCTCAACACCATCAGGCAGGAGAACTCTTCTCTGGTCATGGAGAACAGGCAGCTTATCAGTGACATTGAAGCTGCTCAGCTTGAGTTAGCCAGCTCAAGGTCCAAGATCCGTATGTTGGGATCCACTGTGGGAGCCAGGACTTCCAGTGTATCTCACATGAAGGAGCAGATTCTGGGTCTAGAGGCAGAACTGGACACCCAAACCAAAGCTTTAGAGGCTGCTGAGCAGAAATTGGAAGAAAGCGAACAGACAGTGATGCAGAGTAACAGGCTGGTGGAGAAGCTCAGAGATGAGCTGAGAGTTGTTAAAGCCGAGTTAGCTGAAAGAACACGTCTGGGGAAACGTGCGGAGCAGCAGAGAAACCAAGCGCTCCGAAATGCAGAGAAGCTCACGGTCACCTTCAAAGAATACAAAGAGGATGTTTCTGAAAAACTCAGGACGGTGTTGGAGAGTGAAGGCCAGCTGAAGGTCAGTCTGATGGAGTGTGACAGAGAACGAGAGGAGCTGGAGAGGAAGTGTGCTGAGCTGGAGAGAGAAAAGGAGAGTCTACGTCACAACTTTTGTGAGCTGAAGGAGGTTCACAGCCGCTCTGAGTCTCTCTCTGCTGAGCGTGTGCAGCTGCAGTCTCAGGTTCAGCAGCTCTCAGATCAGCTGAAACAGCTGCAGAGGGAGCTGGCTGAGAAGGAGGCGCAGCTTCAGGAGGTGGCGGGGCTGAAGAGAGAGAATGAGGATCTGCGGCTCCTCACGGCCTGTCAGGAGCAGAGGGTGGCTCAGGCCCACAGAGAAAGAGAACAGGACAGAGCTGAGCTTGCCAGCCTAGAGAGCATACTGGACTTATTACATCTGAGAGAGAATCGGGAGGGTGCGCTGTGTGTGAACCCTTGTTTGCTGTCCACACTGTCTTACACAAGCACCACTGAATCTCTCAAACACAAACCAGGTGAGCGCTATCAGAAGCTGTTGGCAGTGCTTCAGATGGTTGAGAGGGAAAAGACCCGGCAGGCCAGCGCTGCTCAGGGGCTACAGGAGAGACTGACAAGAGCCCAGGAGGAGATCTCCTCCCTGCAGACCTCCATCACAGAGAGATCCTCTCACTACCAGCAGCTCCACAATCAGCTCCTGGACAAGGCTACTCAGGCCACTTCCTTAGAGAAAGAACTAAAAAAGAAGAGTTCTCGTATAACTGTCCTGGAGAAACAGCTGCAGGAGAAGAGTGCTGCTTATTCGCAGACTGTAATGAAGACCAGCCAGCTTGAACAAGATCTTCTGGAAAAGGCCAGCAGTATTCAGCACTACCAGTCAGTCTTGAACAAGAAACAGAGGGAATATCAGCAGACTATAGAGAAAATCAAGACTGCACAGTCACACAAATGCAAAGAACTGGAGGATAGAATAGAAGTGCTGCAGATGTCTCTGGCTCAGAAACAGACTGAACTTGAGGAGCTAGAACAAAATGTGACTGATTTTCATTCAGATAAGCAGGAGTCACAGCAGAGAGCTGCTCTTCTACAGACCATTATAGATCAGCTCACTGAGGATTTTGAAGCAAAATCTAAATGCAGTGAAGAGACACTCAGAAATGTTGAAGAGCAAGCTGCTGACTCTGCTTCAAAGGTGAGGAGCCTGCAGACAGAACTGTCCTCCTGTAAAGAGGAACTGAGTCATTACCTCCAGCAGATGGAGGAGGTGAAGAAACATCATGAGAGACAGCTGGAGCTGAAGAACAGTGAGCTGTCACAGCTGCAGGAAGATCTGAGGAGGAAATGTGTGGCCTATCAGAGCTCCAGTGAGGAAAACCTGCAGCTGCAGCACTCCATGCAGAACCAGCACACCATGCTGCAGGAGAGCACGTCACGCATCGCACAGCTGGAGGAGAGCCAGAGTCAGCTCCAGAGCCAGATAAATAGTGGGATAACATCTATTGATCGCCCACAGGTGTCCCAGTTGGAACAAGATTTGGAGAAGGAGCGCACTGCCTTGTCTCAGGCTCTGAGGAGAAGGGAGAGAGAAGTGGAGGAGGCCACCCAGGAGGTGCAGAAGAAGGAGAGACAGGCTGCAGAGCTCTCTGGCTCCATAACAGCCTTTGTGTCCGTAGCCACTCCTGCTGCACTCCTCCTCTATATATACATTGCTAACAGTGAATTATCTTCGCTGAGGGAAAGCCCTTCACATATTGACTGTTCACGTAAGAGCCAAAACTTGACCACTAGGATTTGCAGTGCTTGTTTTTCTGTCCTTTTTAAGCTGAGTTCAGAGATGAGCAAATGCCGAGTGGAGCTGTCAGACATGGAGCTGGAGCTGTTGCGTCTGAGGAGAGACAGCAACACGAAAGCCTCTCAGCTCAACCAGATGGAGGAGACGCTCAAGGAGACCAAAGGCCTGCTGGATAAGAAGAGCGAAATGGTTATGGACCTTGAAGAGAAGCTCCACCGCAGTGAGATGGACAGGAGGAACTCACTGCAGCGGGCGCAGTTGCTGGAAGGACAGTTGCAGGAGGTGCGTGGAGAGCTGTCAGACACCCTGGGCCATCTGGAGGAGCTGAGAGACGTGCTGCAGCGGACACAGCTGACGTCAGACCAGCAGCAAGCGGCCATCGATAAACTGGCTACTGAGCTCAGAGAGAGTCAGAGAGAACTGGAGGAGAGGAACCATGAGGTGCTGGATCTAGACACTGCACTGAAAGAGAGACAGGGGGAGCTACAGCAGAGAGCACAGCTGTTGGGGCAGCTGGATGTGGCCATTAAGGAGCACAAGCTGGAGATGGAGAAGAAGGTGGAGTATTTACAGGAAGCTCTGGAGAAGAGCCAGAATGAGTTAAGGGAAAAAGACCAGCAGATGCAGTTCCTGACAGAGAGGATGGAGTTGCTGAAATCACAGCTGCAGGTTAAGGAGGACCTTGAGAGGGTATGGCAAATGCTTGATGGGAACTATAGAGAGGAGAGGGGTGCTCTGGATCATGGCCAGCAGCTGCGTGTGTATCGTGAGCAGCTCCAGAAGACGGTGCAGGAGTTACAGGGGGCACAGACACGCTGTGACTCTCTGAACAGACAGATAGATGAAGTCACTCAGCAAGCACGTCATAAGGAGAGTGAAGTTCATCAGCTGCGAGAGGAGATATCTGTGATGGAGAAGCGCTCTACACAGGCTGAGGTCAGACTCCAGGCCACTATTACTGCCCTGCAGCAGGAGCTTGAGCAGCAGAGAGAAGAGCATCACAAAGAGCTTTCAGATCTACAGCAGACTCGTGGGCAGCTGCTGAAGGTTTCGGATCAGATCTCCAGCAGTTTGCGAAACTCTCAGGAGCAGCTGAGCCAGCGGCTGCAACAGGCCCGAGACCAGCTGGAGGAGGCCAGATCTACCTCTGCCCGCCTACACGCCGAGCTTCACAGCAAAGAACAGCTCCTGCAGAGTGCTAATGAGAACCTGCTTATCAAGGAGTCCGAGATCACCCGTCTTCAGGCCAAGCTCTCCAGCTTCGAAAGGGCCACAGAACTACACAATATCACACTTCGTCACAAACCCAGCACTCCTCCATCTCTCTCTCCTCCTCTCAAAGACTCTATTCTTCACGGCTCCCCGTCCCCCTCCCATAAAAACTCTTCAGCACGTTCCAGCCTCTCCTCTTGGCACAACACCTTCTCTGACGCCTCTCTAGAGCTTTCGGACAGTTTGAAAGCTAGTGTTCAGGCTGCACTGCTGCCGCCCCTCTCCCCAGACTGGCAGGGTCTAAGCACCCATGAGGCCACTTTTACTACAGACATGTCCTTTAATCCACTCACGTACATGCTGGACCCAGAGGAACCTGAGGAACCGGACCTAGAGTCTCTGTCAGGTATGCTGAGGTTTGTTAACCAGACTCTGGCCCTTCAAGAGCAGCAATCCCTCTGTGACACCAGCCCCCACAATACAGGCAAGTAATATAACGGCATATAAGGGCATATAATTTGTATTAACTCATACTTAAAGGTAGAATTCACCCAAAAATGAAAGTTCTGCTATCATTTCTTTATTCTGTGGAACACAAAAGATGGTTTAAAAAAAAAAAAAAAAAAATCATCCATAGAATGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29581 lncRNA upstream 14493 3309796 ~ 3310031 (+) True G26199
TU29562 lncRNA upstream 36544 3287606 ~ 3287980 (+) True G26187
TU29561 lncRNA upstream 38362 3285826 ~ 3286162 (+) True G26186
TU29560 lncRNA upstream 41360 3282904 ~ 3283164 (+) True G26185
TU29559 lncRNA upstream 44430 3279893 ~ 3280094 (+) True G26184
TU29468 lncRNA downstream 59430 3408543 ~ 3408815 (+) True G26107
TU29705 lncRNA downstream 233431 3582544 ~ 3582765 (+) True G26317
TU29664 lncRNA downstream 236672 3585785 ~ 3586457 (+) True G26276
TU29617 lncRNA downstream 237722 3586835 ~ 3589187 (+) True G26233
TU29737 lncRNA downstream 306700 3655813 ~ 3656027 (+) True G26349
CI01000004_03311105_03322167.mRNA mRNA upstream 1722 3311105 ~ 3322802 (+) True CI01000004_03311105_03322167
CI01000004_03275086_03275655.mRNA mRNA upstream 48822 3275086 ~ 3275702 (+) True CI01000004_03275086_03275655
CI01000004_03267663_03271388.mRNA mRNA upstream 52962 3266719 ~ 3271562 (+) False CI01000004_03267663_03271388
CI01000004_03223283_03238063.mRNA mRNA upstream 86443 3222913 ~ 3238081 (+) True CI01000004_03223283_03238063
CI01000004_03206527_03212826.mRNA mRNA upstream 111570 3206527 ~ 3212954 (+) True CI01000004_03206527_03212826
CI01000004_03361436_03375825.mRNA mRNA downstream 11805 3360918 ~ 3376605 (+) True CI01000004_03361436_03375825
CI01000004_03378562_03405135.mRNA mRNA downstream 29449 3378562 ~ 3406001 (+) True CI01000004_03378562_03405135
CI01000004_03415537_03416073.mRNA mRNA downstream 65929 3415042 ~ 3416198 (+) True CI01000004_03415537_03416073
CI01000004_03426800_03430289.mRNA mRNA downstream 76349 3425462 ~ 3430421 (+) False CI01000004_03426800_03430289
CI01000004_03432787_03433110.mRNA mRNA downstream 83674 3432787 ~ 3433454 (+) True CI01000004_03432787_03433110
TU29335 other upstream 565586 2758456 ~ 2758938 (+) True CI01000004_02745885_02768971
TU29329 other upstream 587756 2736536 ~ 2736768 (+) True G25992
TU29214 other upstream 751475 2548075 ~ 2573049 (+) True G25882
TU28564 other upstream 1238817 2083057 ~ 2085707 (+) True G25329
TU28515 other upstream 1451166 1864159 ~ 1873358 (+) True G25282
TU29632 other downstream 159904 3509017 ~ 3522393 (+) True G26245
TU29692 other downstream 201935 3551048 ~ 3552446 (+) True CI01000004_03550525_03552621
TU31414 other downstream 2023712 5372825 ~ 5373803 (+) False G27805
TU31416 other downstream 2023712 5372825 ~ 5373803 (+) False G27805
TU31417 other downstream 2023712 5372825 ~ 5373803 (+) False G27805

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031945 True 4507 mRNA 0.51 28 NC_007113.7 10468362 ~ 10564019 (-)