RNA id: CI01000004_03415537_03416073.mRNA



Basic Information


Item Value
RNA id CI01000004_03415537_03416073.mRNA
length 902
RNA type mRNA
GC content 0.38
exon number 2
gene id CI01000004_03415537_03416073
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3415042 ~ 3416198 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCATAAATGGAGACCTTATAACAGATGTGTCAGAGATATCAACACAAGGTTCTGTTACTCTATAACCTGCTCTTATCCTTTTTGAGGTGCTGCTTTATTTGGTAGTGACAGTTATCTTTATATAGTAGCATAAAAATGTTGTCATTGCATTTATTACATTTAAGGAATTTAACAGCAGATTACAACAGTTTTATCTGCATAATAGATTTCCCAATTGTTAGTGGGAGTACTAAAAAGGTGAGGAAGTTTAGGCATGTCTTTTCTGTGTAGGGATGGGAATCATAAAGAACTTAATGATTCCGGTTTATGATATCTCCGCCTTTATTCAAAACAAAGTGGAATGCATTCAAGGTTGACATTTTTCCAGTATATGTTTCCTCTGGGAATCAAACCCACCTATTCTTATTTGGACGTAACTTCCACTGATGCACAGGAATCTGCCAAAATTATCTTCCTGTTGGGAAGGTGGCGAGAGCATCCCCCCCGAGAGTAGAGATGGGCAAGACCCAAGGAAGTGGCTCCCATGAGGCAACTGATGAATGGAAGCCATTGATCCAGCAAGGTGTTTTATGCTGTAAACTGAGAAAGAGAATGGAGTGTGCAGGTGGCATGGAGCTATACAAGTGCCCTCTATATTGGGACAATCATCTCACTTTCTCTTCCTGCTTTGTGAAGCAGCCCCAACTGGACTTGATGTTAGAACAAGTCTTCATTTTAGATTCAAAGACGTTTGATTACCAGGAACAAGGGTTACAAGGAAAACAAACCCAGTATTGACAAAAATGTCAGATGTCAGTGTGTTTCTTTTTTTTCTTTTTTCTTTTTTTTTTTCTCATGTTTAACAGACACCTTGTTTCAAAATTATTGCTTCTAAAAATACACATTCACAGAATTTTTTTGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU29581 lncRNA upstream 105011 3309796 ~ 3310031 (+) True G26199
TU29562 lncRNA upstream 127062 3287606 ~ 3287980 (+) True G26187
TU29561 lncRNA upstream 128880 3285826 ~ 3286162 (+) True G26186
TU29560 lncRNA upstream 131878 3282904 ~ 3283164 (+) True G26185
TU29559 lncRNA upstream 134948 3279893 ~ 3280094 (+) True G26184
TU29705 lncRNA downstream 166346 3582544 ~ 3582765 (+) True G26317
TU29664 lncRNA downstream 169587 3585785 ~ 3586457 (+) True G26276
TU29617 lncRNA downstream 170637 3586835 ~ 3589187 (+) True G26233
TU29737 lncRNA downstream 239615 3655813 ~ 3656027 (+) True G26349
TU29742 lncRNA downstream 250734 3666932 ~ 3667212 (+) True G26354
CI01000004_03378562_03405135.mRNA mRNA upstream 9041 3378562 ~ 3406001 (+) True CI01000004_03378562_03405135
CI01000004_03361436_03375825.mRNA mRNA upstream 38437 3360918 ~ 3376605 (+) True CI01000004_03361436_03375825
CI01000004_03324524_03348961.mRNA mRNA upstream 65929 3324524 ~ 3349113 (+) True CI01000004_03324524_03348961
CI01000004_03311105_03322167.mRNA mRNA upstream 92240 3311105 ~ 3322802 (+) True CI01000004_03311105_03322167
CI01000004_03275086_03275655.mRNA mRNA upstream 139340 3275086 ~ 3275702 (+) True CI01000004_03275086_03275655
CI01000004_03426800_03430289.mRNA mRNA downstream 9264 3425462 ~ 3430421 (+) False CI01000004_03426800_03430289
CI01000004_03432787_03433110.mRNA mRNA downstream 16589 3432787 ~ 3433454 (+) True CI01000004_03432787_03433110
CI01000004_03496175_03497985.mRNA mRNA downstream 78548 3494746 ~ 3498384 (+) True CI01000004_03496175_03497985
CI01000004_03504401_03504700.mRNA mRNA downstream 88080 3504278 ~ 3504932 (+) True CI01000004_03504401_03504700
CI01000004_03550525_03552621.mRNA mRNA downstream 134131 3550329 ~ 3553423 (+) False CI01000004_03550525_03552621
TU29335 other upstream 656104 2758456 ~ 2758938 (+) True CI01000004_02745885_02768971
TU29329 other upstream 678274 2736536 ~ 2736768 (+) True G25992
TU29214 other upstream 841993 2548075 ~ 2573049 (+) True G25882
TU28564 other upstream 1329335 2083057 ~ 2085707 (+) True G25329
TU28515 other upstream 1541684 1864159 ~ 1873358 (+) True G25282
TU29632 other downstream 92819 3509017 ~ 3522393 (+) True G26245
TU29692 other downstream 134850 3551048 ~ 3552446 (+) True CI01000004_03550525_03552621
TU31414 other downstream 1956627 5372825 ~ 5373803 (+) False G27805
TU31416 other downstream 1956627 5372825 ~ 5373803 (+) False G27805
TU31417 other downstream 1956627 5372825 ~ 5373803 (+) False G27805

Expression Profile