RNA id: TU29692


Basic Information

Item Value
RNA id TU29692
length 679
RNA type TUCP
GC content 0.48
exon number 2
gene id CI01000004_03550525_03552621
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3550329 ~ 3553423 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGACCCCGTTGGCGCATCGTACACGTTTCTGTACGGAGGTTTCATGCTGCTGTTGATCGCCATCACCGTCCTGTGTAATTTCGCTGTGTGCCGTTCTCTGGTCGGGATGAGTAAAATGAGTCGCATGGTGAGGGCAGAGGTATCCGGGCACACAGGGTCCAGGCGCAGATTCAAATTAACATCTGCAGCGGAGATCCAGATGTTCTGGTTGTTAATTTTCATGACCATCGTGTTCCTGATATGCTCCATTCCTTTAGTGGTTCGGATTTTTGTCAACCAGCTGTACGATCCTGCTTACATATCATCAGGCAAAAGTCCAGACTATCGCAGTGATCTTCTGGCTATTAGATTTGCCTCCTTCAACCCTATCCTGGACCCATGGGTGTATATTCTGTGCAGGAAAAACTTATTAACCAAAGGTTGCATGCAACTCAAACGTATTATTGGCCTGAGGAAAGGGGATCATAGTCATGTTTTGGGTTGGATGGATGGTCAGCACTCACCTCCGTCATTTGCGCAAAGCAATTGCACAAGTTATGCATCCTTGCGCACAGCCATCTGTAGAAACGACGTGGGTAAACAGACCTGCACGAACACTAAGTCTTATGTGGACTTAACCCTTCGCCAGGCATGGGACTTTGATACAGCCCTGGCTGAGTTTCATCCATTCAGCGTCGA

Function

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04261 PTGER4; prostaglandin E receptor 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29468 lncRNA upstream 119513 3408543 ~ 3408815 (+) True G26107
TU29581 lncRNA upstream 241017 3309796 ~ 3310031 (+) True G26199
TU29562 lncRNA upstream 263068 3287606 ~ 3287980 (+) True G26187
TU29561 lncRNA upstream 264886 3285826 ~ 3286162 (+) True G26186
TU29560 lncRNA upstream 267884 3282904 ~ 3283164 (+) True G26185
TU29705 lncRNA downstream 30098 3582544 ~ 3582765 (+) True G26317
TU29664 lncRNA downstream 33339 3585785 ~ 3586457 (+) True G26276
TU29617 lncRNA downstream 34389 3586835 ~ 3589187 (+) True G26233
TU29737 lncRNA downstream 103367 3655813 ~ 3656027 (+) True G26349
TU29742 lncRNA downstream 114486 3666932 ~ 3667212 (+) True G26354
CI01000004_03504401_03504700.mRNA mRNA upstream 46116 3504278 ~ 3504932 (+) True CI01000004_03504401_03504700
CI01000004_03496175_03497985.mRNA mRNA upstream 52664 3494746 ~ 3498384 (+) True CI01000004_03496175_03497985
CI01000004_03432787_03433110.mRNA mRNA upstream 117594 3432787 ~ 3433454 (+) True CI01000004_03432787_03433110
CI01000004_03426800_03430289.mRNA mRNA upstream 120627 3425462 ~ 3430421 (+) False CI01000004_03426800_03430289
CI01000004_03415537_03416073.mRNA mRNA upstream 134850 3415042 ~ 3416198 (+) True CI01000004_03415537_03416073
CI01000004_03592655_03592917.mRNA mRNA downstream 40209 3592655 ~ 3592917 (+) True CI01000004_03592655_03592917
CI01000004_03735876_03736152.mRNA mRNA downstream 183308 3735754 ~ 3737017 (+) True CI01000004_03735876_03736152
CI01000004_03814120_03839793.mRNA mRNA downstream 261605 3814051 ~ 3839807 (+) True CI01000004_03814120_03839793
CI01000004_03878083_03909016.mRNA mRNA downstream 325573 3878019 ~ 3909309 (+) True CI01000004_03878083_03909016
CI01000004_03934726_03935639.mRNA mRNA downstream 381239 3933685 ~ 3935870 (+) True CI01000004_03934726_03935639
TU29632 other upstream 28655 3509017 ~ 3522393 (+) True G26245
TU29335 other upstream 792110 2758456 ~ 2758938 (+) True CI01000004_02745885_02768971
TU29329 other upstream 814280 2736536 ~ 2736768 (+) True G25992
TU29214 other upstream 977999 2548075 ~ 2573049 (+) True G25882
TU28564 other upstream 1465341 2083057 ~ 2085707 (+) True G25329
TU31414 other downstream 1820379 5372825 ~ 5373803 (+) False G27805
TU31416 other downstream 1820379 5372825 ~ 5373803 (+) False G27805
TU31417 other downstream 1820379 5372825 ~ 5373803 (+) False G27805
TU31418 other downstream 1820379 5372825 ~ 5373803 (+) True G27805
TU31830 other downstream 2180143 5732589 ~ 5733001 (+) True G28165

Expression Profile