RNA id: CI01000004_05459139_05467673.mRNA


Basic Information

Item Value
RNA id CI01000004_05459139_05467673.mRNA
length 2830
RNA type mRNA
GC content 0.45
exon number 11
gene id CI01000004_05459139_05467673
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5459139 ~ 5468857 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAATGGAGGTGACAGTAAAAAACTGAGGGTGGAGGACAGCATGGATAGCCCACCGTCTAGAGTCATTCATATTCGGAAACTCCCCAATGAGGTTTCCGAGACTGAGGTCATCGCACTGGGCTTGCCCTTTGGAAAGGTCACTAATATCCTGATGCTTAAAGGCAAAAATCAGGCATTTTTGGAGCTGGGAACAGAGGAAGCAGCTGTTACCATGGTGAACTACTACACAGCTGTTACACCTCAAGTGCGTAATGTCCCAGTGTTCATTCAGTACTCCAACCACAAAGAGCTCAAGACTGACAGTGCGCTCAACCAGCGAGCTCAGGCCGTGCTGCAGGCGGTGTCTGCGGTCCAGGAGGGCGGCTCTCCAAGCTCGGACACGGCCGGTGAGAGTGTGTTAACACCTGCCCCCAGCCCAGTACTGCGAATAATCATCGACAACATGTTCTACCCAGTCACCCTGGACGTCCTCCAACAGATTTTCTCCAAGTTTGGGACCGTCATGAAGATAATCACATTCACCAAAAATAATCAGTTCCAGGCTCTTCTGCAGTTCAGTGACCCAGTAAATGCCCAGCAGGCCAAACTGTCTTTGGATGGCCAGAACATATACAACTCTTGCTGCACTTTGCGCATTGACTTCTCCAAGCTGGTCAACCTGAACGTAAAATACAACAACGACAAAAGCCGGGATTATACCCGGCCCGAGCTGCCCGCAGGAGATGGCCAACCACCCGTGGACCCCTCTGTGGCCGCCGCTCTCAGCAAAGATTCCACCTCCCTGCTCGGACAGGGACTTTTCCAGTGCTGTCAGAATTGGCAGGGCTTTCATGTTGAAACCACCCCAACCATTTGTCCTGACTTGACATGCAAGATTCATAAACAGTGTCGCTATTTGTCAAAGCATAAATCTGAAGCTGCAACAATAAGCCCTTCCATTCTGCATTATGGGCCTGACACAGTTAGAATGCATGGCCATAGGGCAGATCTGGCTGAGATGCTGAGCCGTCGGCTCTTCCTGGTTATGTGGGCTGACATGGTCCTTCCTCTCTTTTTCTTTCTCGCTGTAGGGGCCATCAGCCCTCTGAGTGCGGCAGCGGCGGCGGCGGCAGCTGCAGGGAGGGTAGCGCTGTCCGGACATTCGGGACCTGGCGGAGTGCTCTTGGTCAGCAACCTCAACGATGAGATGGTTACGCCCCAAAGTCTGTTTACCCTCTTCGCCATGAGCCATCTGAATGGACAGAAGATGTATGGCAAGATCATTCGTGTGACACTCTCTAAGCACCAGACAGTACAGCTGCCTAGGGAGGGTTTAGATGATCAGGGCCTAACCAAGGACTTCACCAGTTCTCCACTACATCGCTTCAAGAAGCCCGGGTCTAAGAACTTCCAGAACATCTTCCCCCCTTCTGCTACACTTCATCTCTCTAACATACCTGAGAATGTGACAGAGGAGGATTTACGACTGCTCTTCTCTAACTCCGGCGGTACAGTGAAAGCGTTCAAGTTTTTCCAAGATCGCAAAATGGCTCTGCTGCAGATGTCCACGGTGGAGGAGGCGATTCAGGCACTCATTGACCTTCACAACTACGACATGGGCCGTGGTCACCGCCTGAGAGTGTCTTTCTCAAAGTCTACCATCTGAGGATTCCCTGGTGCTATGTCACCTTTCCTTTCGCCCCCAGGAGCCTCAAGTCGAAGTCATTTTTACCAGTCATTCCTTAACACCATATCAAAAACTTCAATGAGAATGGCCCTTAAAGGAACACTCGCTCTGTATCTGCTCCTGCTATTGTTTGTTTGGCCAGCTGTTATTCTATTTTAGGATGGATTGACAAAAATGTGCCTTACTTAGCAAAATAGCGTCATCCTTTTGCTCCCGTCATTACAGATTATAGAGGTTTAGGCACATTATGTGTGATGATTTGTAACCTTTACAATCACCTTGCTTTGTTGTTTTGAAGGGTTTTGAAAGTGATAGTTTATTTAGCTCTTGTGTCCTCACCTTGTCATATTTTTTAAAAAACAATTTTTAAGCTTTGAAAGCTAGTCGGCTTGCTTTGATTCAAAGGTAAAAGCTATTTTTTTTATGGTCTGTTGAATTGAATCTGAACACAAGTAATTGAATTTGATGGAATATACTCCAAGTTGTAAATTATCTTGTGCATTTGTTTTATTTTAGGTTGTAGCGTTTCTTTTTTTCTTTGATCAGGCACCCAAGGTACTTTTTGTGATTGAAACCTGTGGTAAACAAAACAATGACAGTGGGGAGCATAGTGTGTGACGTATAGTACCTGCTTTGATATTTCTCACTCACTTTTGCTTCAGTGAATTCTGTTACCCATTTTTAGAAGAAAATCAGAGCATGTGCTGATGGATCTCAGCAGTTGCATGTGTCAGACTGACCATGTTTGATGTTGTGATGTCACATTAATGTAGGGACTGTTGGGACCAAAGTAAATGTGCCTTTAGTCTTACTTTATTCTGCATTGTACAAATGTTTTTTTTCAACCTCTGGAATATTTTTATCAATGGAGAAAAAAAATCAAACTTTCCAACAGACATCACTCATAAATGATCCTTAATTGTCTGTGATTGTAATTGTGTGAGAATCGCTCACTGATTATATTGAAAATGACATTTTTTGTGGTTTAGGTTATGGAAAGGGGAGGGGGGCGTTCTGTACATTTTCTACATGAATTGAGTTTTTACATCTTTAGGAATGTAAAGTTCAGTATAGAAGTGGCACAATTAAAAGTTAATTTTTCTACCAAGCTTGTGCTCGACGGTCCCTGTGTGGTGTAGTGCTTTTATCCTGTAGCATGCTGA

Function

GO:

id name namespace
GO:0036002 pre-mRNA binding molecular_function

KEGG:

id description
K14948 PTBP2, NPTB; polypyrimidine tract-binding protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31557 lncRNA upstream 17426 5441364 ~ 5441713 (+) True G27921
TU31457 lncRNA upstream 89194 5369697 ~ 5369945 (+) True G27836
TU31403 lncRNA upstream 101283 5355151 ~ 5357856 (+) False G27801
TU31404 lncRNA upstream 101283 5355151 ~ 5357856 (+) True G27801
TU31394 lncRNA upstream 182787 5276112 ~ 5276352 (+) True G27794
TU31591 lncRNA downstream 10283 5479140 ~ 5479363 (+) True G27943
TU31592 lncRNA downstream 10678 5479535 ~ 5479749 (+) True G27944
TU31570 lncRNA downstream 12948 5481805 ~ 5581710 (+) True G27924
TU31672 lncRNA downstream 170874 5639731 ~ 5639932 (+) True G28018
TU31674 lncRNA downstream 172983 5641840 ~ 5642113 (+) True G28020
CI01000004_05454350_05455993.mRNA mRNA upstream 3146 5453841 ~ 5455993 (+) True CI01000004_05454350_05455993
CI01000004_05397192_05402109.mRNA mRNA upstream 57030 5397095 ~ 5402109 (+) True CI01000004_05397192_05402109
CI01000004_05389431_05393230.mRNA mRNA upstream 64928 5389370 ~ 5394211 (+) True CI01000004_05389431_05393230
CI01000004_05343381_05353920.mRNA mRNA upstream 104908 5343381 ~ 5354231 (+) True CI01000004_05343381_05353920
CI01000004_05238552_05246750.mRNA mRNA upstream 212025 5237204 ~ 5247114 (+) True CI01000004_05238552_05246750
CI01000004_05474127_05476501.mRNA mRNA downstream 4222 5473079 ~ 5476755 (+) True CI01000004_05474127_05476501
CI01000004_05735852_05752650.mRNA mRNA downstream 266941 5735798 ~ 5754011 (+) True CI01000004_05735852_05752650
CI01000004_05781905_05788633.mRNA mRNA downstream 312745 5781602 ~ 5790006 (+) True CI01000004_05781905_05788633
CI01000004_05800602_05802011.mRNA mRNA downstream 331745 5800602 ~ 5802087 (+) True CI01000004_05800602_05802011
CI01000004_05812640_05834517.mRNA mRNA downstream 343783 5812640 ~ 5834517 (+) True CI01000004_05812640_05834517
TU31414 other upstream 85336 5372825 ~ 5373803 (+) False G27805
TU31416 other upstream 85336 5372825 ~ 5373803 (+) False G27805
TU31417 other upstream 85336 5372825 ~ 5373803 (+) False G27805
TU31418 other upstream 85336 5372825 ~ 5373803 (+) True G27805
TU29692 other upstream 1906693 3551048 ~ 3552446 (+) True CI01000004_03550525_03552621
TU31830 other downstream 263732 5732589 ~ 5733001 (+) True G28165
TU32005 other downstream 1001171 6470028 ~ 6502087 (+) True G28302
TU32079 other downstream 1102363 6572819 ~ 6574421 (+) True G28354
TU32454 other downstream 2185915 7654772 ~ 7654879 (+) True G28706
TU32590 other downstream 2964848 8439958 ~ 8451227 (+) True G28818

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030755 False 2900 mRNA 0.46 15 NC_007113.7 19777146 ~ 19795593 (+)