Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU27420 |
| length | 1002 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 1 |
| gene id | G24292 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 377110 ~ 378111 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU27480 | lncRNA | upstream | 20713 | 356102 ~ 356397 (+) | True | G24347 |
| TU27421 | lncRNA | upstream | 32429 | 340135 ~ 344681 (+) | True | G24293 |
| TU27472 | lncRNA | upstream | 91032 | 285867 ~ 286078 (+) | True | G24339 |
| TU27404 | lncRNA | upstream | 252612 | 117912 ~ 124498 (+) | True | G24279 |
| TU27374 | lncRNA | upstream | 284820 | 83666 ~ 92290 (+) | False | G24251 |
| TU27491 | lncRNA | downstream | 46160 | 424271 ~ 424487 (+) | True | G24358 |
| TU27492 | lncRNA | downstream | 48598 | 426709 ~ 426910 (+) | True | G24359 |
| TU27584 | lncRNA | downstream | 130771 | 508882 ~ 511729 (+) | True | G24426 |
| TU27589 | lncRNA | downstream | 138766 | 516877 ~ 519291 (+) | True | G24431 |
| TU27568 | lncRNA | downstream | 343404 | 721515 ~ 722125 (+) | True | G24410 |
| CI01000004_00318181_00339002.mRNA | mRNA | upstream | 37090 | 317234 ~ 340020 (+) | True | CI01000004_00318181_00339002 |
| CI01000004_00311036_00314134.mRNA | mRNA | upstream | 62976 | 309804 ~ 314134 (+) | True | CI01000004_00311036_00314134 |
| CI01000004_00291677_00292816.mRNA | mRNA | upstream | 84284 | 291342 ~ 292826 (+) | True | CI01000004_00291677_00292816 |
| CI01000004_00266091_00278846.mRNA | mRNA | upstream | 98264 | 266091 ~ 278846 (+) | True | CI01000004_00266091_00278846 |
| CI01000004_00226186_00234811.mRNA | mRNA | upstream | 141058 | 226186 ~ 236052 (+) | True | CI01000004_00226186_00234811 |
| CI01000004_00407881_00409797.mRNA | mRNA | downstream | 29770 | 407881 ~ 410139 (+) | True | CI01000004_00407881_00409797 |
| CI01000004_00467911_00469949.mRNA | mRNA | downstream | 89691 | 467802 ~ 470083 (+) | False | CI01000004_00467911_00469949 |
| CI01000004_00544278_00547753.mRNA | mRNA | downstream | 164822 | 542933 ~ 547983 (+) | True | CI01000004_00544278_00547753 |
| CI01000004_00584081_00605137.mRNA | mRNA | downstream | 205970 | 584081 ~ 605802 (+) | True | CI01000004_00584081_00605137 |
| CI01000004_00617015_00621040.mRNA | mRNA | downstream | 238904 | 617015 ~ 621258 (+) | True | CI01000004_00617015_00621040 |
| TU27514 | other | downstream | 89732 | 467843 ~ 471846 (+) | True | CI01000004_00467911_00469949 |
| TU28378 | other | downstream | 954354 | 1332465 ~ 1333989 (+) | False | CI01000004_01332533_01345585 |
| TU28341 | other | downstream | 963297 | 1347470 ~ 1348174 (+) | True | G25120 |
| TU28416 | other | downstream | 1226431 | 1604542 ~ 1616470 (+) | True | G25187 |
| TU28515 | other | downstream | 1486048 | 1864159 ~ 1873358 (+) | True | G25282 |
