RNA id: TU27584


Basic Information

Item Value
RNA id TU27584
length 372
lncRNA type antisense_over
GC content 0.37
exon number 4
gene id G24426
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 508882 ~ 511729 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAAGTTGTACTTGACCAAAGGCTGCAAATACTTCCTCCTTTCCAGTCCACAACCTGCCCTGAATGTTATGCAGATTCTGTTTGTTTTGGACTGTGATGCAGATCTTTGAGTCTTGAGGAATTCTCTCAGTGCTGAAAGACTGGACTATTGAGGAGCACACATATGGCTGTTGTGGTTGGAAACCCAGAGTAAGGATGTGAATGGCTTTTTTGTTTCCATGGACTAGAACCTTTGACTCCAAAGTGTAAACCTTCTGATGAAGATCACTTGTGAATGTCTCCTGGAGGATGAGACTCTGAGGGAGAAATTTGAATGGTTGTCTGAAATTTAGCTTCCATCTTTTCTGATAAACCCTCCTGTCCTTCCGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27492 lncRNA upstream 81972 426709 ~ 426910 (+) True G24359
TU27491 lncRNA upstream 84395 424271 ~ 424487 (+) True G24358
TU27420 lncRNA upstream 130771 377110 ~ 378111 (+) True G24292
TU27480 lncRNA upstream 152485 356102 ~ 356397 (+) True G24347
TU27421 lncRNA upstream 164201 340135 ~ 344681 (+) True G24293
TU27589 lncRNA downstream 5148 516877 ~ 519291 (+) True G24431
TU27568 lncRNA downstream 209786 721515 ~ 722125 (+) True G24410
TU27571 lncRNA downstream 210661 722390 ~ 722637 (+) True G24413
TU27670 lncRNA downstream 239309 751038 ~ 753326 (+) True G24509
TU27576 lncRNA downstream 244601 756330 ~ 756931 (+) True G24418
CI01000004_00467911_00469949.mRNA mRNA upstream 38799 467802 ~ 470083 (+) False CI01000004_00467911_00469949
CI01000004_00407881_00409797.mRNA mRNA upstream 98743 407881 ~ 410139 (+) True CI01000004_00407881_00409797
CI01000004_00318181_00339002.mRNA mRNA upstream 168862 317234 ~ 340020 (+) True CI01000004_00318181_00339002
CI01000004_00311036_00314134.mRNA mRNA upstream 194748 309804 ~ 314134 (+) True CI01000004_00311036_00314134
CI01000004_00291677_00292816.mRNA mRNA upstream 216056 291342 ~ 292826 (+) True CI01000004_00291677_00292816
CI01000004_00544278_00547753.mRNA mRNA downstream 31204 542933 ~ 547983 (+) True CI01000004_00544278_00547753
CI01000004_00584081_00605137.mRNA mRNA downstream 72352 584081 ~ 605802 (+) True CI01000004_00584081_00605137
CI01000004_00617015_00621040.mRNA mRNA downstream 105286 617015 ~ 621258 (+) True CI01000004_00617015_00621040
CI01000004_00630734_00632040.mRNA mRNA downstream 118900 630629 ~ 632205 (+) True CI01000004_00630734_00632040
CI01000004_00664431_00666004.mRNA mRNA downstream 152702 664431 ~ 667351 (+) True CI01000004_00664431_00666004
TU27514 other upstream 37036 467843 ~ 471846 (+) True CI01000004_00467911_00469949
TU28378 other downstream 820736 1332465 ~ 1333989 (+) False CI01000004_01332533_01345585
TU28341 other downstream 829679 1347470 ~ 1348174 (+) True G25120
TU28416 other downstream 1092813 1604542 ~ 1616470 (+) True G25187
TU28515 other downstream 1352430 1864159 ~ 1873358 (+) True G25282
TU28564 other downstream 1571328 2083057 ~ 2085707 (+) True G25329

Expression Profile