RNA id: TU27571


Basic Information

Item Value
RNA id TU27571
length 248
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G24413
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 722390 ~ 722637 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTGGACTAATCCTTTAATATTATAAAGCAACGAGAATACTTTTTGTGCTCCATAAAAACAAAATAATTACTTTAACAATATCTAGTGATAGCCGATTTCAAAACACTGCTTCGAAGCTTTACGAATCTTTTGTTTCGAATCAGTGATTCGGATCACGTATCAAACTGCTGAAATCACATGACTTTGGCGTTCAGAACATCGCCCATCACTAGATATTGTTGAAAAGTCGTTATTTTGTTTTTTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27568 lncRNA upstream 265 721515 ~ 722125 (+) True G24410
TU27589 lncRNA upstream 203099 516877 ~ 519291 (+) True G24431
TU27584 lncRNA upstream 210661 508882 ~ 511729 (+) True G24426
TU27492 lncRNA upstream 295480 426709 ~ 426910 (+) True G24359
TU27491 lncRNA upstream 297903 424271 ~ 424487 (+) True G24358
TU27670 lncRNA downstream 28401 751038 ~ 753326 (+) True G24509
TU27576 lncRNA downstream 33693 756330 ~ 756931 (+) True G24418
TU27696 lncRNA downstream 78717 801354 ~ 802056 (+) True G24534
TU27673 lncRNA downstream 88969 811606 ~ 813049 (+) True G24511
TU27710 lncRNA downstream 120365 843002 ~ 843846 (+) True G24548
CI01000004_00711100_00720189.mRNA mRNA upstream 1674 711100 ~ 720716 (+) True CI01000004_00711100_00720189
CI01000004_00664431_00666004.mRNA mRNA upstream 55039 664431 ~ 667351 (+) True CI01000004_00664431_00666004
CI01000004_00630734_00632040.mRNA mRNA upstream 90185 630629 ~ 632205 (+) True CI01000004_00630734_00632040
CI01000004_00617015_00621040.mRNA mRNA upstream 101132 617015 ~ 621258 (+) True CI01000004_00617015_00621040
CI01000004_00584081_00605137.mRNA mRNA upstream 116588 584081 ~ 605802 (+) True CI01000004_00584081_00605137
CI01000004_01002230_01003932.mRNA mRNA downstream 279381 1002018 ~ 1003982 (+) True CI01000004_01002230_01003932
CI01000004_01069526_01076799.mRNA mRNA downstream 346889 1069526 ~ 1077028 (+) True CI01000004_01069526_01076799
CI01000004_01094661_01097428.mRNA mRNA downstream 372024 1094661 ~ 1097658 (+) True CI01000004_01094661_01097428
CI01000004_01113222_01149263.mRNA mRNA downstream 390445 1113082 ~ 1149991 (+) True CI01000004_01113222_01149263
CI01000004_01167271_01194834.mRNA mRNA downstream 443302 1165939 ~ 1195104 (+) True CI01000004_01167271_01194834
TU27514 other upstream 250544 467843 ~ 471846 (+) True CI01000004_00467911_00469949
TU28378 other downstream 609828 1332465 ~ 1333989 (+) False CI01000004_01332533_01345585
TU28341 other downstream 618771 1347470 ~ 1348174 (+) True G25120
TU28416 other downstream 881905 1604542 ~ 1616470 (+) True G25187
TU28515 other downstream 1141522 1864159 ~ 1873358 (+) True G25282
TU28564 other downstream 1360420 2083057 ~ 2085707 (+) True G25329

Expression Profile