RNA id: TU27576



Basic Information


Item Value
RNA id TU27576
length 602
lncRNA type antisense_over
GC content 0.33
exon number 1
gene id G24418
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 756330 ~ 756931 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACAACAGCAAAATAAACAGAAACTGCATTACGATATGAAAAGAAAAGAGAGCACTGAAAAAAAAAATAAGCACAAAATAGCATTTTAAAATAATTACAAAATATTATTCCCATTTAATTTTCAGAACATATAGCCTAAGATTTAATATGTATATAGGTCCATGTATGATTTTCTTATAAATATATACTGAAGAAAGATATTGCTATTACATTTAGCTGGACTTCTCTCACATCTCTTAAAATAATTTCTTAAGATCTAAAAAAAAAAAAAAAAAAAAAAAAACTTAGGAGGGCTGAATGTGTGGGGGAAAATTTGCTCTGTACATCAGCACAGAATTAGTCATGTTGTTCCATCAGTGTTCTGTGGATCTCCAGGAACGTGGGCCTTTCTTTGGCATTTCTCTTCCAGCAGTTGAGCATGAGGCTGTACACTGAATCAGGACAGCAGAACGGCTTTGGCAAATAGACCTGAGGGGTTCAAAAAAAAAAAAAAAAAAAAAAGCTCAGCACTGACACCTTTTGTATTTTCCATGTTATTACATGGATTCTTCCTGACTCATCTTGCAGTGGCAGCTATTTTTAGGTATTGGAGGGAAAACGCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU27670 lncRNA upstream 3004 751038 ~ 753326 (+) True G24509
TU27571 lncRNA upstream 33693 722390 ~ 722637 (+) True G24413
TU27568 lncRNA upstream 34205 721515 ~ 722125 (+) True G24410
TU27589 lncRNA upstream 237039 516877 ~ 519291 (+) True G24431
TU27584 lncRNA upstream 244601 508882 ~ 511729 (+) True G24426
TU27696 lncRNA downstream 44423 801354 ~ 802056 (+) True G24534
TU27673 lncRNA downstream 54675 811606 ~ 813049 (+) True G24511
TU27710 lncRNA downstream 86071 843002 ~ 843846 (+) True G24548
TU27716 lncRNA downstream 102821 859752 ~ 859990 (+) True G24551
TU27724 lncRNA downstream 114882 871813 ~ 872019 (+) True G24559
CI01000004_00711100_00720189.mRNA mRNA upstream 35614 711100 ~ 720716 (+) True CI01000004_00711100_00720189
CI01000004_00664431_00666004.mRNA mRNA upstream 88979 664431 ~ 667351 (+) True CI01000004_00664431_00666004
CI01000004_00630734_00632040.mRNA mRNA upstream 124125 630629 ~ 632205 (+) True CI01000004_00630734_00632040
CI01000004_00617015_00621040.mRNA mRNA upstream 135072 617015 ~ 621258 (+) True CI01000004_00617015_00621040
CI01000004_00584081_00605137.mRNA mRNA upstream 150528 584081 ~ 605802 (+) True CI01000004_00584081_00605137
CI01000004_01002230_01003932.mRNA mRNA downstream 245087 1002018 ~ 1003982 (+) True CI01000004_01002230_01003932
CI01000004_01069526_01076799.mRNA mRNA downstream 312595 1069526 ~ 1077028 (+) True CI01000004_01069526_01076799
CI01000004_01094661_01097428.mRNA mRNA downstream 337730 1094661 ~ 1097658 (+) True CI01000004_01094661_01097428
CI01000004_01113222_01149263.mRNA mRNA downstream 356151 1113082 ~ 1149991 (+) True CI01000004_01113222_01149263
CI01000004_01167271_01194834.mRNA mRNA downstream 409008 1165939 ~ 1195104 (+) True CI01000004_01167271_01194834
TU27514 other upstream 284484 467843 ~ 471846 (+) True CI01000004_00467911_00469949
TU28378 other downstream 575534 1332465 ~ 1333989 (+) False CI01000004_01332533_01345585
TU28341 other downstream 584477 1347470 ~ 1348174 (+) True G25120
TU28416 other downstream 847611 1604542 ~ 1616470 (+) True G25187
TU28515 other downstream 1107228 1864159 ~ 1873358 (+) True G25282
TU28564 other downstream 1326126 2083057 ~ 2085707 (+) True G25329

Expression Profile