RNA id: TU27673



Basic Information


Item Value
RNA id TU27673
length 1147
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G24511
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 811606 ~ 813049 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AATAAATAACCCACATTTGTTCATCAAATATAAATAATACTTTTTTCAATGTAACTTTTCAATAAATACTCATAGGAAATACAAAAATACTCAAACACGCACAAAAAACAAAAACAAAAATAGTTTTACATATAAATGTGCAAAAGTGATTCTGCTTTCACAGTTATTATCCAGTGCTACAAACTTCTACAAACTACAAAATCTTCCCGTGTGCTCCAATGCTGTATTCATAGAATGGATTTCAAGTCCCAAGGCCTTCCAATCTGGCTTTGAGTCAGTTCAGTCCTCCTGAACCCCAAGAAACTGGTTCAGATCATTCACTGACCGCCACGTCACATAAATGCCATGTTTATCTGGGACGCATTCCGCTGCTGCTGTCTTTAGAGTGGCCATGGGTAGTTTAACCCAAATGTTGTGTGATGAGTTCCTGGTAGACTGTTGATTTGAGGAAACGAGGGTAGCAGTCTTTCTCCATGAGGGTGTAAATTTTACTCTGGGCGAGGGTGAAGCAGGACTGTTTGGGTTGCTCCATATTCTTCAAGGTGATGGTTCTAGTTTCATGATCAAGATTAACCTGAAAATATGGAAAGAAATGATTTGCCATTAGACTTTTTCATGATATTTTTCTATTAAGTATGAGTCTTCTGCGCTATTAATATTCTTAGGAAATTTACCTCTCTTGGTGCGTCAGAGCAGATGAACTCCTCATAGATTTTCTTGGCCTTGCAGCACAGCTTTGAGGAGTTCTTTGTGTTCCTGTAGTCCTCACAGGCCAAATAGAAAGCAATATTTTCTTCACTGTACTCAGATGACAGGAAAGCTGTGAAAGCGCACAGTCCTTCTTGTGAAGCAGGAGTTCATGGAAAGATTGGCTCCATTTTTGTCTGTTCTCCAGTGTTAGCTTGTCAGTTTTTTGCGAGTGGCCCATGATATTAAGCTCTTGCTTTAGCAGAAAATTTCCAAACCGAGCCTTGAGCTCTTTTGCCCTGTAAGGAACAAAAACGTCCATCATTTCATTTGGGAAAAGTACTTATAATTGATTAAAAAATCTGAATTTATCATTAGAAATACAGTATTATCATTTAACAATTTAGACTTAAGCTATACTTAAACTAGGGTCTAGTTTGAAAGAAAATATTGACATTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU27696 lncRNA upstream 9550 801354 ~ 802056 (+) True G24534
TU27576 lncRNA upstream 54675 756330 ~ 756931 (+) True G24418
TU27670 lncRNA upstream 58280 751038 ~ 753326 (+) True G24509
TU27571 lncRNA upstream 88969 722390 ~ 722637 (+) True G24413
TU27568 lncRNA upstream 89481 721515 ~ 722125 (+) True G24410
TU27710 lncRNA downstream 29953 843002 ~ 843846 (+) True G24548
TU27716 lncRNA downstream 46703 859752 ~ 859990 (+) True G24551
TU27724 lncRNA downstream 58764 871813 ~ 872019 (+) True G24559
TU27727 lncRNA downstream 72855 885904 ~ 886117 (+) True G24562
TU27746 lncRNA downstream 110338 923387 ~ 928821 (+) True G24580
CI01000004_00711100_00720189.mRNA mRNA upstream 90890 711100 ~ 720716 (+) True CI01000004_00711100_00720189
CI01000004_00664431_00666004.mRNA mRNA upstream 144255 664431 ~ 667351 (+) True CI01000004_00664431_00666004
CI01000004_00630734_00632040.mRNA mRNA upstream 179401 630629 ~ 632205 (+) True CI01000004_00630734_00632040
CI01000004_00617015_00621040.mRNA mRNA upstream 190348 617015 ~ 621258 (+) True CI01000004_00617015_00621040
CI01000004_00584081_00605137.mRNA mRNA upstream 205804 584081 ~ 605802 (+) True CI01000004_00584081_00605137
CI01000004_01002230_01003932.mRNA mRNA downstream 188969 1002018 ~ 1003982 (+) True CI01000004_01002230_01003932
CI01000004_01069526_01076799.mRNA mRNA downstream 256477 1069526 ~ 1077028 (+) True CI01000004_01069526_01076799
CI01000004_01094661_01097428.mRNA mRNA downstream 281612 1094661 ~ 1097658 (+) True CI01000004_01094661_01097428
CI01000004_01113222_01149263.mRNA mRNA downstream 300033 1113082 ~ 1149991 (+) True CI01000004_01113222_01149263
CI01000004_01167271_01194834.mRNA mRNA downstream 352890 1165939 ~ 1195104 (+) True CI01000004_01167271_01194834
TU27514 other upstream 339760 467843 ~ 471846 (+) True CI01000004_00467911_00469949
TU28378 other downstream 519416 1332465 ~ 1333989 (+) False CI01000004_01332533_01345585
TU28341 other downstream 528359 1347470 ~ 1348174 (+) True G25120
TU28416 other downstream 791493 1604542 ~ 1616470 (+) True G25187
TU28515 other downstream 1051110 1864159 ~ 1873358 (+) True G25282
TU28564 other downstream 1270008 2083057 ~ 2085707 (+) True G25329

Expression Profile