RNA id: TU27788


Basic Information

Item Value
RNA id TU27788
length 390
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G24621
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1021621 ~ 1022010 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGGCAGATCTGAACCATGTGCAATGTCCAAATATTCTTTAATATAATCCTCCAACGATCGTGTGCCCTGCTCGAGCCATAACAACAATTGTGCAATGTTCCTACTGGGCCAGTGTTCTCCAGAAAAGCTGCTGGATCCTTGTATTGGCGAGGTCTTCTGTAACGAGTCGGGACACGACGTAGAATCCATGTGCATGCTTTAATAAACAGTGTTCGTAGTCAGACAGGCAATGGTAGAACAACAGCAGACAGGTACAGCAGAGAGCAGACAGAATCGTAGTCGTAGAACAGGCAATAGGTCAGGGCGGGCAGATATCAATCATAAGTCCAAGACAGAACAAATAGTCCAAAGGGCAGGCAGCAGAAAATCGTGCACGGGGAACAAACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27771 lncRNA upstream 47573 973819 ~ 974048 (+) True G24604
TU27752 lncRNA upstream 89585 931633 ~ 932036 (+) True G24585
TU27750 lncRNA upstream 90983 930304 ~ 930638 (+) True G24583
TU27746 lncRNA upstream 92800 923387 ~ 928821 (+) True G24580
TU27727 lncRNA upstream 135504 885904 ~ 886117 (+) True G24562
TU27798 lncRNA downstream 19288 1041298 ~ 1041503 (+) True G24631
TU27805 lncRNA downstream 33085 1055095 ~ 1055333 (+) True G24638
TU27807 lncRNA downstream 34534 1056544 ~ 1057124 (+) True G24640
TU27808 lncRNA downstream 41687 1063697 ~ 1064152 (+) True G24641
TU27688 lncRNA downstream 58801 1080811 ~ 1081534 (+) True G24526
CI01000004_01002230_01003932.mRNA mRNA upstream 17639 1002018 ~ 1003982 (+) True CI01000004_01002230_01003932
CI01000004_00711100_00720189.mRNA mRNA upstream 300905 711100 ~ 720716 (+) True CI01000004_00711100_00720189
CI01000004_00664431_00666004.mRNA mRNA upstream 354270 664431 ~ 667351 (+) True CI01000004_00664431_00666004
CI01000004_00630734_00632040.mRNA mRNA upstream 389416 630629 ~ 632205 (+) True CI01000004_00630734_00632040
CI01000004_00617015_00621040.mRNA mRNA upstream 400363 617015 ~ 621258 (+) True CI01000004_00617015_00621040
CI01000004_01069526_01076799.mRNA mRNA downstream 47516 1069526 ~ 1077028 (+) True CI01000004_01069526_01076799
CI01000004_01094661_01097428.mRNA mRNA downstream 72651 1094661 ~ 1097658 (+) True CI01000004_01094661_01097428
CI01000004_01113222_01149263.mRNA mRNA downstream 91072 1113082 ~ 1149991 (+) True CI01000004_01113222_01149263
CI01000004_01167271_01194834.mRNA mRNA downstream 143929 1165939 ~ 1195104 (+) True CI01000004_01167271_01194834
CI01000004_01210703_01220270.mRNA mRNA downstream 188444 1210454 ~ 1220283 (+) True CI01000004_01210703_01220270
TU27514 other upstream 549775 467843 ~ 471846 (+) True CI01000004_00467911_00469949
TU28378 other downstream 310455 1332465 ~ 1333989 (+) False CI01000004_01332533_01345585
TU28341 other downstream 319398 1347470 ~ 1348174 (+) True G25120
TU28416 other downstream 582532 1604542 ~ 1616470 (+) True G25187
TU28515 other downstream 842149 1864159 ~ 1873358 (+) True G25282
TU28564 other downstream 1061047 2083057 ~ 2085707 (+) True G25329

Expression Profile