RNA id: TU28310


Basic Information

Item Value
RNA id TU28310
length 285
lncRNA type intronic
GC content 0.34
exon number 1
gene id G25089
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1132293 ~ 1132577 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCATGCAAATATTTCCATTTTGCTGCTAAACTTTACAGTGAACGAGCGCTGCTGCGCGCATGCGCACTAAACAGACGGGACGCAATAGAAGCGCAATAATTCTGACTAAAATATACATTTTGCTAAAATATTTGATGTTGGACATTAAATGTGCCTTATGTACAATTTTAAACCTACAAGTAAGTGTATTTTTATGATAGTAACTGTAAATGGACTATTGTAATGGGGTAAATCAATATACTTTAGGCCAACTACTGAGTTTAGATTCATCTTGCCAATTAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28260 lncRNA upstream 25369 1106696 ~ 1106924 (+) True G25044
TU27688 lncRNA upstream 50759 1080811 ~ 1081534 (+) True G24526
TU27808 lncRNA upstream 68141 1063697 ~ 1064152 (+) True G24641
TU27807 lncRNA upstream 75169 1056544 ~ 1057124 (+) True G24640
TU27805 lncRNA upstream 76960 1055095 ~ 1055333 (+) True G24638
TU28296 lncRNA downstream 8050 1140627 ~ 1160430 (+) True G25076
TU28283 lncRNA downstream 99158 1231735 ~ 1231938 (+) True G25063
TU28351 lncRNA downstream 157645 1290222 ~ 1290678 (+) True G25129
TU28366 lncRNA downstream 178466 1311043 ~ 1311591 (+) True G25143
TU28452 lncRNA downstream 312488 1445065 ~ 1445396 (+) True G25222
CI01000004_01094661_01097428.mRNA mRNA upstream 34635 1094661 ~ 1097658 (+) True CI01000004_01094661_01097428
CI01000004_01069526_01076799.mRNA mRNA upstream 55265 1069526 ~ 1077028 (+) True CI01000004_01069526_01076799
CI01000004_01002230_01003932.mRNA mRNA upstream 128311 1002018 ~ 1003982 (+) True CI01000004_01002230_01003932
CI01000004_00711100_00720189.mRNA mRNA upstream 411577 711100 ~ 720716 (+) True CI01000004_00711100_00720189
CI01000004_00664431_00666004.mRNA mRNA upstream 464942 664431 ~ 667351 (+) True CI01000004_00664431_00666004
CI01000004_01167271_01194834.mRNA mRNA downstream 33362 1165939 ~ 1195104 (+) True CI01000004_01167271_01194834
CI01000004_01210703_01220270.mRNA mRNA downstream 77877 1210454 ~ 1220283 (+) True CI01000004_01210703_01220270
CI01000004_01228506_01230204.mRNA mRNA downstream 95828 1228405 ~ 1230414 (+) True CI01000004_01228506_01230204
CI01000004_01237895_01247463.mRNA mRNA downstream 103791 1236368 ~ 1247463 (+) False CI01000004_01237895_01247463
CI01000004_01263941_01279547.mRNA mRNA downstream 131364 1263941 ~ 1279758 (+) True CI01000004_01263941_01279547
TU27514 other upstream 660447 467843 ~ 471846 (+) True CI01000004_00467911_00469949
TU28378 other downstream 199888 1332465 ~ 1333989 (+) False CI01000004_01332533_01345585
TU28341 other downstream 208831 1347470 ~ 1348174 (+) True G25120
TU28416 other downstream 471965 1604542 ~ 1616470 (+) True G25187
TU28515 other downstream 731582 1864159 ~ 1873358 (+) True G25282
TU28564 other downstream 950480 2083057 ~ 2085707 (+) True G25329

Expression Profile