RNA id: TU28351


Basic Information

Item Value
RNA id TU28351
length 436
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G25129
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1290222 ~ 1290678 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAAAACATGCTTTTTACATGGCAATGAATCTCACATGGAAGTGTCATGTAAACTTGTACAGTGTGTTGAGTGGGCTCACCCTGAAGAGGCTGTGTGTGTCCTGTGTGAGAATGGTGTGTCGACGATCATCTGTGTGAGGATCAGGCACGGTTTCGATTCCTGCTCCCAACAGCTCATTCCTTAGCAGTGCAGCATACGCCACAGCATCTGTAAATAGTTGTTTTTTCTAATATTTATATTTTTTGTTTCATACATATATATACATACAGGGGTTGGACAATGAAACTTTAGACCTAGCATACAGCAAGCACTGAACCAGACTAAACCAAAGCACTAAACCAAATGTTAAGCAAGCAATCTCATTGGCTGCAGAATCAGAGGCCAATCAGCTTGTAATGATGTGATTGCTTGCAGACTGCATGTAAAGGACCTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28283 lncRNA upstream 53828 1231735 ~ 1231938 (+) True G25063
TU28296 lncRNA upstream 129792 1140627 ~ 1160430 (+) True G25076
TU28310 lncRNA upstream 157645 1132293 ~ 1132577 (+) True G25089
TU28260 lncRNA upstream 183298 1106696 ~ 1106924 (+) True G25044
TU27688 lncRNA upstream 208688 1080811 ~ 1081534 (+) True G24526
TU28366 lncRNA downstream 20365 1311043 ~ 1311591 (+) True G25143
TU28452 lncRNA downstream 154387 1445065 ~ 1445396 (+) True G25222
TU28431 lncRNA downstream 168655 1465948 ~ 1489877 (+) True G25201
TU28456 lncRNA downstream 279941 1570619 ~ 1570878 (+) True G25226
TU28422 lncRNA downstream 294588 1585266 ~ 1585620 (+) True G25192
CI01000004_01263941_01279547.mRNA mRNA upstream 10464 1263941 ~ 1279758 (+) True CI01000004_01263941_01279547
CI01000004_01237895_01247463.mRNA mRNA upstream 42759 1236368 ~ 1247463 (+) False CI01000004_01237895_01247463
CI01000004_01228506_01230204.mRNA mRNA upstream 59808 1228405 ~ 1230414 (+) True CI01000004_01228506_01230204
CI01000004_01210703_01220270.mRNA mRNA upstream 69939 1210454 ~ 1220283 (+) True CI01000004_01210703_01220270
CI01000004_01167271_01194834.mRNA mRNA upstream 95118 1165939 ~ 1195104 (+) True CI01000004_01167271_01194834
CI01000004_01302094_01304391.mRNA mRNA downstream 10471 1301149 ~ 1304664 (+) True CI01000004_01302094_01304391
CI01000004_01305065_01310559.mRNA mRNA downstream 14387 1305065 ~ 1310559 (+) True CI01000004_01305065_01310559
CI01000004_01321057_01329157.mRNA mRNA downstream 30379 1321057 ~ 1329157 (+) True CI01000004_01321057_01329157
CI01000004_01332533_01345585.mRNA mRNA downstream 40905 1331583 ~ 1346008 (+) False CI01000004_01332533_01345585
CI01000004_01377802_01389208.mRNA mRNA downstream 87007 1377685 ~ 1389415 (+) True CI01000004_01377802_01389208
TU27514 other upstream 818376 467843 ~ 471846 (+) True CI01000004_00467911_00469949
TU28378 other downstream 41787 1332465 ~ 1333989 (+) False CI01000004_01332533_01345585
TU28341 other downstream 50730 1347470 ~ 1348174 (+) True G25120
TU28416 other downstream 313864 1604542 ~ 1616470 (+) True G25187
TU28515 other downstream 573481 1864159 ~ 1873358 (+) True G25282
TU28564 other downstream 792379 2083057 ~ 2085707 (+) True G25329

Expression Profile