RNA id: TU28452


Basic Information

Item Value
RNA id TU28452
length 332
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G25222
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1445065 ~ 1445396 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACGGACTAAAACGGAGACTTTTGAAAACGATGGCGTGGCTGCCCACGTTTGCTCTGCGTATCCTTGACGACCGTGTAAACAATAACATGGAGAGTGAACTGCAATCCTTGCTGGCTTTGTCATTTTTAGCAGCCATTGTGCAGTAAAACTCTGCATTTGAGTTTACACTTGTATGCGCATGCGCAGTGTGCGTGAATGTCATGTGACGTGTTTTTGGCCGTGTAGTGTAGATGGAGATTGTTTCGGAAATGCTGTGGAAATGCCAGTGTAGACAAGAATCGTTTTCATTTTGAAAGGCTGTTTTAAAACAAAAATGCACTAGTGTAAACGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28366 lncRNA upstream 133474 1311043 ~ 1311591 (+) True G25143
TU28351 lncRNA upstream 154387 1290222 ~ 1290678 (+) True G25129
TU28283 lncRNA upstream 208671 1231735 ~ 1231938 (+) True G25063
TU28296 lncRNA upstream 284635 1140627 ~ 1160430 (+) True G25076
TU28310 lncRNA upstream 312488 1132293 ~ 1132577 (+) True G25089
TU28431 lncRNA downstream 13937 1465948 ~ 1489877 (+) True G25201
TU28456 lncRNA downstream 125223 1570619 ~ 1570878 (+) True G25226
TU28422 lncRNA downstream 139870 1585266 ~ 1585620 (+) True G25192
TU28472 lncRNA downstream 258861 1704257 ~ 1704558 (+) True G25242
TU28479 lncRNA downstream 311594 1757912 ~ 1759222 (+) True G25249
CI01000004_01426795_01429440.mRNA mRNA upstream 15625 1426795 ~ 1429440 (+) True CI01000004_01426795_01429440
CI01000004_01377802_01389208.mRNA mRNA upstream 55650 1377685 ~ 1389415 (+) True CI01000004_01377802_01389208
CI01000004_01332533_01345585.mRNA mRNA upstream 99057 1331583 ~ 1346008 (+) False CI01000004_01332533_01345585
CI01000004_01321057_01329157.mRNA mRNA upstream 115908 1321057 ~ 1329157 (+) True CI01000004_01321057_01329157
CI01000004_01305065_01310559.mRNA mRNA upstream 134506 1305065 ~ 1310559 (+) True CI01000004_01305065_01310559
CI01000004_01446583_01461259.mRNA mRNA downstream 807 1446203 ~ 1461916 (+) False CI01000004_01446583_01461259
CI01000004_01501609_01545725.mRNA mRNA downstream 56213 1501609 ~ 1546119 (+) True CI01000004_01501609_01545725
CI01000004_01578642_01584658.mRNA mRNA downstream 133170 1578566 ~ 1584808 (+) True CI01000004_01578642_01584658
CI01000004_01592461_01602968.mRNA mRNA downstream 146960 1592356 ~ 1602968 (+) True CI01000004_01592461_01602968
CI01000004_01623427_01625278.mRNA mRNA downstream 178031 1623427 ~ 1625340 (+) True CI01000004_01623427_01625278
TU28341 other upstream 96891 1347470 ~ 1348174 (+) True G25120
TU28378 other upstream 111076 1332465 ~ 1333989 (+) False CI01000004_01332533_01345585
TU27514 other upstream 973219 467843 ~ 471846 (+) True CI01000004_00467911_00469949
TU28416 other downstream 159146 1604542 ~ 1616470 (+) True G25187
TU28515 other downstream 418763 1864159 ~ 1873358 (+) True G25282
TU28564 other downstream 637661 2083057 ~ 2085707 (+) True G25329
TU29214 other downstream 1102679 2548075 ~ 2573049 (+) True G25882
TU29329 other downstream 1291140 2736536 ~ 2736768 (+) True G25992

Expression Profile